View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165_high_20 (Length: 333)
Name: NF5165_high_20
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 49698752 - 49698446
Alignment:
| Q |
19 |
ctgccatcatcgtgttccgggagaattccatctccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgtggcttt |
118 |
Q |
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| T |
49698752 |
ctgccatcatcgtgttccgggagaattccatctccattatgattttccatcatgttcatatttctctcatgatctaaggcatcatcatcgttgtggcttt |
49698653 |
T |
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| Q |
119 |
catacatcatttttgcacaccgtagagattagtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagctagctaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49698652 |
catacatcatttttgcacaccgtagagattagtaacaatgtttcaatgaaatttcttaatgtcacgattgtacgtctacggtttttatgaagctagctaa |
49698553 |
T |
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| Q |
219 |
ctttgttcaatcattatatgattaatcaccatgcaacactagcttctttattaattctctggagatggaatttgtgtggtattgtatggtgttaattgct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49698552 |
ctttgttcaatcattatatgattaatcaccatgcaacaccagcttctttattaattctctggagatggaatttgtgtggtattgtatggtgttaattgct |
49698453 |
T |
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| Q |
319 |
tcatctc |
325 |
Q |
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|| |||| |
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| T |
49698452 |
tcttctc |
49698446 |
T |
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