View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5165_high_35 (Length: 255)
Name: NF5165_high_35
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_high_35 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 22418301 - 22418056
Alignment:
| Q |
1 |
aatgatagagatgatttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22418301 |
aatgatagagatgatatatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgta |
22418202 |
T |
|
| Q |
101 |
tcttttgaagctattcattttcttcaatccttctctaatttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacataggatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22418201 |
tcttttgaagctattcattttcttcaatcctactctaatttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacataggatg |
22418102 |
T |
|
| Q |
201 |
atttttattttgaagggttgatgaactatgaagatgatgatgatgt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22418101 |
atttttattttgaagggttgatgaactatgaagatgatgatgatgt |
22418056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 12813459 - 12813220
Alignment:
| Q |
3 |
tgatagagatgatttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12813459 |
tgatagagatgatttatgggtttcaaagaaagagataatgatatttgaaacttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatc |
12813360 |
T |
|
| Q |
103 |
ttttgaagctattcattttcttcaatccttctctaatttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacataggatgat |
202 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12813359 |
ttttgaagctattcattttcttcaattcttctctaatttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacataggatgac |
12813260 |
T |
|
| Q |
203 |
ttttattttgaagggttgatgaactatgaagatgatgatg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12813259 |
ttttattttgaagggttgatgaactatgaagatgatgatg |
12813220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 14998437 - 14998348
Alignment:
| Q |
3 |
tgatagagatgatttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaa |
92 |
Q |
| |
|
||||| ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| || ||| || ||||| |||| ||||||| |
|
|
| T |
14998437 |
tgataaagatgatttctgggtttgaaagaaagagataatgatattttaagcttttcaattttgtagatacatgagaaagatttgaaagaa |
14998348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 14998326 - 14998276
Alignment:
| Q |
191 |
acataggatgatttttattttgaagggttgatgaactatgaagatgatgat |
241 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
14998326 |
acataagatgatttttattttgaagggtttatgaattatgaagatgatgat |
14998276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University