View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165_high_43 (Length: 248)
Name: NF5165_high_43
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_high_43 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 246884 - 247124
Alignment:
| Q |
10 |
aatatagtaaacatagtgt--ttattttctggtggtgatggaggtatacgtatgatattacattagttcattttgaatgctatccactccgaccacaata |
107 |
Q |
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| T |
246884 |
aatatagtaaacatagtgtatttattttctggtggtgatggaggtatacgtatgatattacattagttcattttgaatgccatccactccgaccacaata |
246983 |
T |
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| Q |
108 |
gctagcaataacatgaattagaaaacatgattagtttctgaagtaacaggtctcggagaaggtggcagcgccatcaggaacatcttccattacccattca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
246984 |
gctagcaataacatgaattagaaaacatgattagtttctgaagtaacaggtctcggagaaggtggcagcaccatcaggaacatcttccattacccattca |
247083 |
T |
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| Q |
208 |
tggccaacagggaagtaaattccagtccttgggtgtggaac |
248 |
Q |
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| T |
247084 |
tggccaacagggaagtaaattccagtccttgggtgtggaac |
247124 |
T |
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