View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5165_high_47 (Length: 240)

Name: NF5165_high_47
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5165_high_47
NF5165_high_47
[»] chr6 (1 HSPs)
chr6 (67-223)||(10752388-10752564)
[»] scaffold0413 (2 HSPs)
scaffold0413 (119-223)||(8042-8146)
scaffold0413 (67-118)||(7966-8017)
[»] chr2 (4 HSPs)
chr2 (67-115)||(14490071-14490119)
chr2 (119-170)||(16131971-16132022)
chr2 (119-155)||(14490142-14490178)
chr2 (68-108)||(16132050-16132090)
[»] chr8 (1 HSPs)
chr8 (119-219)||(21232586-21232680)
[»] chr7 (1 HSPs)
chr7 (67-118)||(10290124-10290175)
[»] chr1 (1 HSPs)
chr1 (67-118)||(21265534-21265585)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 223
Target Start/End: Complemental strand, 10752564 - 10752388
Alignment:
Q  67 ccttgcctaattgatgccactaccaccatattttcttctccccttatgccac-------------------aggtcaatgaaattggttatttggttcct 147  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||                   |||||||||||||||||||||||||||||    
T  10752564 ccttgcctaattgatgccactaccaccatatttttctctccccttatgccactatggttccgtgaattgctaggtcaatgaaattggttatttggttcct 10752465  T
Q  148 aaaaactaggcacatattagctactctacatatttcaattccctcacactcagttgg-ctttctcactcattcaatt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  10752464 aaaaactaggcacatattagctactctacatatttcaattccctcaccctcagttggtttttctcactcattcaatt 10752388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 119 - 223
Target Start/End: Original strand, 8042 - 8146
Alignment:
Q  119 aggtcaatgaaattggttatttggttcctaaaaactaggcacatattagctactctacatatttcaattccctcacactcagttggctttctcactcatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |||||||||||||    
T  8042 aggtcaatgaaattggttatttggttcctaaaaactaggcacatattagctaccctacatatttcaattccctcaccctcaattggttttctcactcatt 8141  T
Q  219 caatt 223  Q
    |||||    
T  8142 caatt 8146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 7966 - 8017
Alignment:
Q  67 ccttgcctaattgatgccactaccaccatattttcttctccccttatgccac 118  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  7966 ccttgcctaattgatgccactaccaccatatttttctctccccttatgccac 8017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 14490071 - 14490119
Alignment:
Q  67 ccttgcctaattgatgccactaccaccatattttcttctccccttatgc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14490071 ccttgcctaattgatgccactaccaccatattttcttctccccttatgc 14490119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 16132022 - 16131971
Alignment:
Q  119 aggtcaatgaaattggttatttggttcctaaaaactaggcacatattagcta 170  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  16132022 aggtcaatgaagttgattatttggttcctaaaaactaggcacatattagcta 16131971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 14490142 - 14490178
Alignment:
Q  119 aggtcaatgaaattggttatttggttcctaaaaacta 155  Q
    |||||||||||||||||||||||||||||||||||||    
T  14490142 aggtcaatgaaattggttatttggttcctaaaaacta 14490178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 16132090 - 16132050
Alignment:
Q  68 cttgcctaattgatgccactaccaccatattttcttctccc 108  Q
    |||||||| |||||||||||||| |||||||| ||||||||    
T  16132090 cttgcctagttgatgccactaccgccatatttccttctccc 16132050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 21232680 - 21232586
Alignment:
Q  119 aggtcaatgaaattggttatttggttcctaaaaactaggcacatattagctactctacatatttcaattccctcacactcagttggctttctcactcatt 218  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||     |||  ||||||||||| |||||| || ||||| |||||||||||||    
T  21232680 aggtcaatgaagttagttatttggttcctaaaaactaggcacatattag-----ctatgtatttcaattcactcacaatcggttgg-tttctcactcatt 21232587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 10290175 - 10290124
Alignment:
Q  67 ccttgcctaattgatgccactaccaccatattttcttctccccttatgccac 118  Q
    |||||| |||||||||||||||||||||||||||  ||||||||||||||||    
T  10290175 ccttgcataattgatgccactaccaccatatttttctctccccttatgccac 10290124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 21265585 - 21265534
Alignment:
Q  67 ccttgcctaattgatgccactaccaccatattttcttctccccttatgccac 118  Q
    |||||| |||||||||||||||||||||||||||  ||||||||||||||||    
T  21265585 ccttgcataattgatgccactaccaccatatttttatctccccttatgccac 21265534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University