View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165_high_5 (Length: 458)
Name: NF5165_high_5
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 8496816 - 8496386
Alignment:
| Q |
18 |
acgattctcaaccctaaccctagttgttgtttttctttcctgtgttgcatcctcctatgcagctaatgttgcagatccacaaaccatttgcaagaaagcc |
117 |
Q |
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| T |
8496816 |
acgattctcaaccctaaccctagttattgtttttctttcctgtgttgcatcctcctatgcagctaatgttgcagatccacaaaccatttgcaagaaagcc |
8496717 |
T |
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| Q |
118 |
aaagatccatctttttgcttgaattttctgaaatcaaagcccggtggtgttggcggagatctcaacagtttgttaaagtacacccttggtgtgcttcgta |
217 |
Q |
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| T |
8496716 |
aaagatccatctttttgcttgaattttctgaaatcaaagcccggtggtgttggcagagatctcaacagtttgttaaagtacacccttggtgtgcttcgta |
8496617 |
T |
|
| Q |
218 |
ccaatgtgtccggaacaatctctttaatcacgaaactaattgcacaaagtggcaatgatctcgagnnnnnnnnctattataagagttgtttgacttttta |
317 |
Q |
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| T |
8496616 |
ccgatgtgtccggaacaatctctttaatcacgaaactaattgcacaaagtggcaatgatctcgagaaaaaaaactattataagagttgtttgacttttta |
8496517 |
T |
|
| Q |
318 |
tgcagaggatgaaggagctcttggtgagattgaggaagcacaagacctcttgaaccgttctgattacaatggtgttaatgtgcatatcagtggtgtcatg |
417 |
Q |
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| T |
8496516 |
tgcagaggatgaaggagctcttggtgagattgaggaagcacaagacctcttgaaccgttctgattacaatggtgttaatgtgcatatcagtggtgtcatg |
8496417 |
T |
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| Q |
418 |
agcgatgtttataactgccgtactgatgatg |
448 |
Q |
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| T |
8496416 |
agcgatgtttataactgcggtactggtgatg |
8496386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 32 - 277
Target Start/End: Original strand, 8503585 - 8503830
Alignment:
| Q |
32 |
taaccctagttgttgtttttctttcctgtgttgcatcctcctatgcagctaatgttgcagatccacaaaccatttgcaagaaagccaaagatccatcttt |
131 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||||| | |||||||| ||| ||| | ||||||||| |||||||||| || ||||| |
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| T |
8503585 |
taaccctagttgttgtgtttcttttttgtgttgcatcctcctatgccgttaatgttgttgatgtgcaagctatttgcaaggaagccaaagacccttcttt |
8503684 |
T |
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| Q |
132 |
ttgcttgaattttctgaaatcaaagcccggtggtgttggcggagatctcaacagtttgttaaagtacacccttggtgtgcttcgtaccaatgtgtccgga |
231 |
Q |
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| T |
8503685 |
ttgtttaactcttctcaaatcaaagccaggtggtgtaggtcaagacctcaatagtcttgcacaatacaccattgacgtgcttcataccaatgtatcgaat |
8503784 |
T |
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| Q |
232 |
acaatctctttaatcacgaaactaattgcacaaagtggcaatgatc |
277 |
Q |
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| T |
8503785 |
acagtcactctaatcacaaaactaatcgcacaaagtggcagtgatc |
8503830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 8501703 - 8501752
Alignment:
| Q |
36 |
cctagttgttgtttttctttcctgtgttgcatcctcctatgcagctaatg |
85 |
Q |
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|||||||||||| ||||||| ||||| ||||| |||||||||||||||| |
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| T |
8501703 |
cctagttgttgtgtttcttttttgtgtcgcatcgtcctatgcagctaatg |
8501752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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