View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165_high_50 (Length: 233)
Name: NF5165_high_50
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_high_50 |
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Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 11195368 - 11195504
Alignment:
| Q |
17 |
gcaaagaggaaaatcatgaatcttaacatatatacagaactcgtatacatctgtaaggacaccgaacaaattatcatatagttgacattgtcaccataaa |
116 |
Q |
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| T |
11195368 |
gcaaagagggaaaagattaatcttaacatatatacagaagtcatatacatttgtaagcacgttgaataaattatcatatagttgacattgtcaccttaaa |
11195467 |
T |
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| Q |
117 |
cttgaaatttaacaatacaatttgaatgaagttttaa |
153 |
Q |
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| T |
11195468 |
cttgaaattttacaatacaatttgaatgaagttttaa |
11195504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 11154921 - 11155121
Alignment:
| Q |
17 |
gcaaagaggaaaatcatgaatcttaacatatatacagaactcgtatacatctgtaaggacaccgaacaaattatcatatagttgacattgtcaccataaa |
116 |
Q |
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| T |
11154921 |
gcaaagagggaaaagattaaccttgacatatatacagaagtcatatacatttataagcacgttgaacaaattatcatatagttgacattgtcaccttaaa |
11155020 |
T |
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| Q |
117 |
cttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaagctagcccggtgatgttagatgttgcagct |
216 |
Q |
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| T |
11155021 |
cttgaaattttacaatacaatttgaatgaagttttaatctttttttacaaagtcaacaatgagttgagaggctagcccggtgatgttagttgttgcagct |
11155120 |
T |
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| Q |
217 |
g |
217 |
Q |
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| T |
11155121 |
g |
11155121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 11246591 - 11246483
Alignment:
| Q |
113 |
taaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnn----caaaaagtcaacaattatagaagaagctagcccggtgatgttagatg |
208 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
11246591 |
taaactagaaatttcacaatacaatttgaatgaagttttaacttttttttcttcataaagtcaacaattatagaagaagctagcccgatgatgttagttg |
11246492 |
T |
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| Q |
209 |
ttgcagctg |
217 |
Q |
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||||||||| |
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| T |
11246491 |
ttgcagctg |
11246483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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