View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5165_high_6 (Length: 449)

Name: NF5165_high_6
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5165_high_6
NF5165_high_6
[»] chr1 (20 HSPs)
chr1 (238-446)||(26821378-26821586)
chr1 (240-441)||(50979242-50979443)
chr1 (242-446)||(38843151-38843355)
chr1 (242-441)||(15353228-15353427)
chr1 (243-446)||(36496053-36496256)
chr1 (240-446)||(38627536-38627742)
chr1 (241-446)||(7593205-7593410)
chr1 (242-446)||(51488497-51488701)
chr1 (243-446)||(5271505-5271708)
chr1 (242-446)||(27000268-27000472)
chr1 (246-428)||(27575898-27576081)
chr1 (319-418)||(47655888-47655987)
chr1 (318-388)||(11051192-11051262)
chr1 (353-415)||(1762251-1762313)
chr1 (320-418)||(6706132-6706230)
chr1 (320-418)||(13509940-13510038)
chr1 (318-415)||(11829075-11829172)
chr1 (320-418)||(46406421-46406519)
chr1 (320-418)||(35604814-35604912)
chr1 (318-383)||(46033716-46033781)
[»] chr3 (21 HSPs)
chr3 (240-446)||(51129016-51129222)
chr3 (242-446)||(47141403-47141607)
chr3 (242-446)||(47696999-47697203)
chr3 (242-440)||(1527531-1527729)
chr3 (242-446)||(52691927-52692131)
chr3 (241-446)||(38469067-38469272)
chr3 (320-418)||(33025798-33025896)
chr3 (320-418)||(42074392-42074490)
chr3 (320-419)||(53687376-53687475)
chr3 (320-418)||(51229727-51229825)
chr3 (320-389)||(51407464-51407533)
chr3 (322-418)||(48181071-48181167)
chr3 (338-416)||(11263709-11263787)
chr3 (320-418)||(42274518-42274616)
chr3 (320-418)||(45150598-45150696)
chr3 (320-416)||(48254506-48254602)
chr3 (320-418)||(28182370-28182468)
chr3 (353-415)||(30809842-30809904)
chr3 (320-418)||(31813401-31813499)
chr3 (353-415)||(44610827-44610889)
chr3 (353-415)||(44328692-44328754)
[»] chr2 (18 HSPs)
chr2 (240-446)||(44282492-44282698)
chr2 (237-446)||(40254339-40254548)
chr2 (242-446)||(31786699-31786903)
chr2 (242-446)||(14379660-14379864)
chr2 (251-446)||(31686789-31686984)
chr2 (246-446)||(2443667-2443868)
chr2 (320-418)||(37640761-37640859)
chr2 (320-418)||(37996718-37996816)
chr2 (323-418)||(3739048-3739143)
chr2 (320-418)||(7473518-7473616)
chr2 (320-418)||(17480814-17480912)
chr2 (354-415)||(37551592-37551653)
chr2 (320-418)||(14033372-14033470)
chr2 (320-418)||(43342277-43342375)
chr2 (320-418)||(13892752-13892850)
chr2 (320-418)||(14032877-14032975)
chr2 (320-418)||(35458185-35458283)
chr2 (357-415)||(44002684-44002742)
[»] chr4 (22 HSPs)
chr4 (240-441)||(24038068-24038269)
chr4 (242-446)||(31431037-31431241)
chr4 (240-446)||(24246538-24246744)
chr4 (240-446)||(39382959-39383165)
chr4 (243-446)||(18140375-18140578)
chr4 (243-446)||(49127588-49127791)
chr4 (255-441)||(51834225-51834412)
chr4 (320-418)||(53404111-53404209)
chr4 (320-418)||(45105807-45105904)
chr4 (320-418)||(52058252-52058350)
chr4 (325-418)||(30418397-30418490)
chr4 (320-416)||(22606362-22606458)
chr4 (318-388)||(28911579-28911649)
chr4 (320-418)||(38767791-38767889)
chr4 (321-418)||(53663635-53663732)
chr4 (320-416)||(28963870-28963966)
chr4 (353-415)||(16203097-16203159)
chr4 (353-415)||(39732843-39732905)
chr4 (353-415)||(50523874-50523936)
chr4 (320-392)||(49723784-49723855)
chr4 (353-415)||(5937846-5937908)
chr4 (327-392)||(26457118-26457183)
[»] chr8 (15 HSPs)
chr8 (242-446)||(30984303-30984507)
chr8 (242-441)||(30210394-30210593)
chr8 (242-446)||(34774349-34774553)
chr8 (286-396)||(629476-629586)
chr8 (383-446)||(189774-189837)
chr8 (383-446)||(717378-717441)
chr8 (383-446)||(878485-878548)
chr8 (320-418)||(35164381-35164474)
chr8 (320-418)||(35802344-35802442)
chr8 (318-388)||(924099-924169)
chr8 (242-285)||(308872-308915)
chr8 (320-418)||(45276403-45276501)
chr8 (320-418)||(8416662-8416760)
chr8 (320-392)||(36821653-36821725)
chr8 (353-415)||(3590107-3590169)
[»] chr7 (15 HSPs)
chr7 (242-446)||(31012404-31012608)
chr7 (242-440)||(25341452-25341650)
chr7 (129-239)||(35422288-35422398)
chr7 (17-132)||(35422426-35422541)
chr7 (297-428)||(41064585-41064717)
chr7 (320-418)||(25970433-25970531)
chr7 (318-415)||(39857075-39857172)
chr7 (319-418)||(37371078-37371177)
chr7 (320-418)||(14999868-14999966)
chr7 (320-418)||(30825190-30825288)
chr7 (322-418)||(26826384-26826480)
chr7 (320-418)||(25472765-25472863)
chr7 (320-418)||(12909229-12909327)
chr7 (320-418)||(43664814-43664912)
chr7 (353-415)||(19544572-19544634)
[»] chr5 (19 HSPs)
chr5 (243-446)||(29542443-29542646)
chr5 (240-446)||(42663354-42663560)
chr5 (237-446)||(3260840-3261049)
chr5 (240-446)||(33114954-33115160)
chr5 (243-446)||(14082814-14083017)
chr5 (318-415)||(2526282-2526379)
chr5 (320-392)||(53693-53765)
chr5 (320-418)||(27739351-27739449)
chr5 (322-419)||(8958502-8958599)
chr5 (320-417)||(37066560-37066657)
chr5 (320-417)||(41040137-41040234)
chr5 (320-418)||(7073275-7073373)
chr5 (320-418)||(21022632-21022730)
chr5 (320-418)||(33229204-33229302)
chr5 (320-418)||(39236896-39236994)
chr5 (353-392)||(40979452-40979491)
chr5 (353-415)||(10900165-10900227)
chr5 (320-418)||(19356501-19356599)
chr5 (353-415)||(19375409-19375471)
[»] chr6 (8 HSPs)
chr6 (240-441)||(30018771-30018972)
chr6 (246-428)||(31746179-31746359)
chr6 (318-415)||(4146810-4146907)
chr6 (320-418)||(21517357-21517455)
chr6 (353-392)||(30134180-30134219)
chr6 (320-418)||(365591-365689)
chr6 (353-415)||(20838498-20838560)
chr6 (353-415)||(27825057-27825119)
[»] scaffold0069 (1 HSPs)
scaffold0069 (320-388)||(16815-16883)
[»] scaffold0006 (1 HSPs)
scaffold0006 (321-418)||(91535-91634)
[»] scaffold0808 (1 HSPs)
scaffold0808 (320-418)||(4090-4188)
[»] scaffold0068 (1 HSPs)
scaffold0068 (320-416)||(37697-37791)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 238 - 446
Target Start/End: Original strand, 26821378 - 26821586
Alignment:
Q  238 actaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttc 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26821378 actaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttc 26821477  T
Q  338 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattc 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26821478 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattc 26821577  T
Q  438 catctctgc 446  Q
    |||| ||||    
T  26821578 catccctgc 26821586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 240 - 441
Target Start/End: Complemental strand, 50979443 - 50979242
Alignment:
Q  240 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50979443 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 50979344  T
Q  340 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50979343 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 50979244  T
Q  440 tc 441  Q
    ||    
T  50979243 tc 50979242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 242 - 446
Target Start/End: Original strand, 38843151 - 38843355
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843151 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 38843250  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843251 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 38843350  T
Q  442 tctgc 446  Q
     ||||    
T  38843351 cctgc 38843355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 242 - 441
Target Start/End: Original strand, 15353228 - 15353427
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15353228 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 15353327  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15353328 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 15353427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 243 - 446
Target Start/End: Complemental strand, 36496256 - 36496053
Alignment:
Q  243 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36496256 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 36496157  T
Q  343 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36496156 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 36496057  T
Q  443 ctgc 446  Q
    ||||    
T  36496056 ctgc 36496053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 240 - 446
Target Start/End: Original strand, 38627536 - 38627742
Alignment:
Q  240 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38627536 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 38627635  T
Q  340 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38627636 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttca 38627735  T
Q  440 tctctgc 446  Q
    || ||||    
T  38627736 tccctgc 38627742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 241 - 446
Target Start/End: Complemental strand, 7593410 - 7593205
Alignment:
Q  241 aagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7593410 aagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 7593311  T
Q  341 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7593310 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctccaccctcaattctattaattccat 7593211  T
Q  441 ctctgc 446  Q
    | ||||    
T  7593210 ccctgc 7593205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 242 - 446
Target Start/End: Complemental strand, 51488701 - 51488497
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51488701 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaaa 51488602  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51488601 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 51488502  T
Q  442 tctgc 446  Q
     ||||    
T  51488501 cctgc 51488497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 243 - 446
Target Start/End: Complemental strand, 5271708 - 5271505
Alignment:
Q  243 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5271708 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 5271609  T
Q  343 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5271608 agcttttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 5271509  T
Q  443 ctgc 446  Q
    ||||    
T  5271508 ctgc 5271505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 242 - 446
Target Start/End: Complemental strand, 27000472 - 27000268
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27000472 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatatttggtttggcttttcaaaa 27000373  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 441  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27000372 tagtttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 27000273  T
Q  442 tctgc 446  Q
     ||||    
T  27000272 cctgc 27000268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 246 - 428
Target Start/End: Original strand, 27575898 - 27576081
Alignment:
Q  246 tctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggcttttcaaaatag 344  Q
    |||||||||||||||||||| | ||| |||| |||||||  | |||| ||||||||||||| ||| |||| || |||||||||||| ||||||| ||| |    
T  27575898 tctgtttggtttggcttttgtacagctagaagcaattctacaacattccaaaagcaattctacaacatttcaatatgtttggtttgacttttcataattg 27575997  T
Q  345 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 428  Q
    ||| ||||||||||||||||||||   | ||| |||||||  |||||||| ||||| |||||||||||||||||||||||||||    
T  27575998 cttctatcctccaaaagcaattctccataaagttacaatttttagcttctgacttttctagaatcaattctacaccctcaattc 27576081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 418
Target Start/End: Complemental strand, 47655987 - 47655888
Alignment:
Q  319 atgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||||||||||||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||||||||| ||||| |||||||||||||||||    
T  47655987 atgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccttaaagctacaaatcctagcttctaacttttctagaatcaattctaca 47655888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 11051262 - 11051192
Alignment:
Q  318 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 388  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| ||||| | |||||| ||||||||||||    
T  11051262 catgtttggtttgacttttcaaaattgcttctatcctccaaaaacaattatggttgaatctacaattccta 11051192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 1762251 - 1762313
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    |||||||||||||||| ||||||||||||||||||| ||| | | ||| ||||||||||||||    
T  1762251 ctccaaaagcaattctggttgaagctacaattcctaacttttaagtttactagaatcaattct 1762313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 6706132 - 6706230
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||| ||||||||||| | ||| | || |||||||||||| ||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  6706132 tgtttagtttggcttttaagaattgattctatcctccaaaaacaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 6706230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 13510038 - 13509940
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||||||| |||||| | ||| | || |||||||||||||||||| |  || |||||| || |||||||||||  |||| |||||||||||||||||    
T  13510038 tgtttggtttagcttttaagaattgattctatcctccaaaagcaattatccttaaagctataaatcctagcttctagcttttctagaatcaattctaca 13509940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 415
Target Start/End: Original strand, 11829075 - 11829172
Alignment:
Q  318 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    ||||||||||||| ||||| | ||| |||| |||||||||||||||||||| | ||||| || |||||||| ||| | | ||  ||||||||||||||    
T  11829075 catgtttggtttgccttttaagaattgcttctatcctccaaaagcaattctggatgaaggtataattcctaacttttgagttaactagaatcaattct 11829172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 46406421 - 46406519
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| || |||||| |  ||||  ||||||||||||||||    
T  46406421 tgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcttagcttttggcttttgtagaatcaattctaca 46406519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 35604814 - 35604912
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||| |||| ||||| | ||| |||| |||||||||||| ||||| |  |||||||||||| |  |||||| | |||||  ||||||||||||||||    
T  35604814 tgtttgatttgacttttaagaattgcttctatcctccaaaaacaattatccttgaagctacaaatattagcttttgacttttgtagaatcaattctaca 35604912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 46033781 - 46033716
Alignment:
Q  318 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaat 383  Q
    |||||||| |||| ||||||||||| |||| |||||| ||||| |||||||  |||||| ||||||    
T  46033781 catgtttgatttgacttttcaaaattgcttctatccttcaaaaacaattctcattgaagttacaat 46033716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 240 - 446
Target Start/End: Complemental strand, 51129222 - 51129016
Alignment:
Q  240 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51129222 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 51129123  T
Q  340 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51129122 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 51129023  T
Q  440 tctctgc 446  Q
    || ||||    
T  51129022 tccctgc 51129016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 242 - 446
Target Start/End: Complemental strand, 47141607 - 47141403
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47141607 agcctctgtttggtttggcatttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 47141508  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47141507 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcttagaatcaattctacaccctcaattctattaattccatc 47141408  T
Q  442 tctgc 446  Q
     ||||    
T  47141407 cctgc 47141403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 242 - 446
Target Start/End: Original strand, 47696999 - 47697203
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47696999 agcctctgtttggtttggcttttgcaaagccagaatcaattctgaagcatttcaaaagcaattctgcaatatttaacatgtttggtttgccttttcaaaa 47697098  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47697099 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 47697198  T
Q  442 tctgc 446  Q
     ||||    
T  47697199 cctgc 47697203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 242 - 440
Target Start/End: Original strand, 1527531 - 1527729
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  1527531 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaac 1527630  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 440  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1527631 tagcttttatcctccgaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 1527729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 242 - 446
Target Start/End: Original strand, 52691927 - 52692131
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  52691927 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttaaaaa 52692026  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 441  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52692027 tagattttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatc 52692126  T
Q  442 tctgc 446  Q
     ||||    
T  52692127 cctgc 52692131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 241 - 446
Target Start/End: Original strand, 38469067 - 38469272
Alignment:
Q  241 aagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 340  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  38469067 aagcctctgtttggtttggcttttgcaaagccagaatcaattatggagcatttcaaaagcaattctgcaatatttaacatgtttggtttaccttttcaaa 38469166  T
Q  341 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 440  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38469167 atagtttttatcctccaaaagcaattctagttgaagctacaattcttagcttcttactttcctataatcaattctacaccctcaattctattaattccat 38469266  T
Q  441 ctctgc 446  Q
    | ||||    
T  38469267 ccctgc 38469272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 33025896 - 33025798
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||||||  || ||||||||||||||||||| |  |||||||| |||||||||||||    
T  33025896 tgtttggtttgacttttcaaaattgcttctatcctccaaaagcaattctccttaaagctacaattcctagcttttggctttcctataatcaattctaca 33025798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 42074392 - 42074490
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||||| ||| |||| |||||||||||| |||||||  || ||||||||||||||||||| | ||||| || ||||||||||||||    
T  42074392 tgtttggtttggcttttcagaattgcttctatcctccaaaaacaattctccttaaagctacaattcctagcttttgactttgctcgaatcaattctaca 42074490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 320 - 419
Target Start/End: Complemental strand, 53687475 - 53687376
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacac 419  Q
    ||||||||||| ||||||| ||| |||| |||||||||||||||||||| ||| |||||||||||||||| || |  |||| ||| ||||||||||||||    
T  53687475 tgtttggtttgacttttcataattgcttctatcctccaaaagcaattcttgttaaagctacaattcctaggttttggcttttctaaaatcaattctacac 53687376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 51229727 - 51229825
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||||||| |||||||||||| |||| ||||||||||||  ||||||  || ||||||||||||||| ||| |  ||||||||||||||||||||||    
T  51229727 tgtttggtttagcttttcaaaattgcttctatcctccaaaaataattctccttaaagctacaattcctaacttttggctttcctagaatcaattctaca 51229825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 51407464 - 51407533
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctag 389  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||||| | ||||||||||||||| ||||    
T  51407464 tgtttggtttggcttttcagaattgcttctatcctccaaaagcaattttggttgaagctacaatttctag 51407533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 418
Target Start/End: Original strand, 48181071 - 48181167
Alignment:
Q  322 tttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||| | ||| | ||| |||| ||||||||||||||||||||  || || |||||||||||||||| |  ||||||||||||||||||||||    
T  48181071 tttggtttgacattttagaattgcttctatcctccaaaagcaattctccttaaaactacaattcctagcttttggctttcctagaatcaattctaca 48181167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 416
Target Start/End: Original strand, 11263709 - 11263787
Alignment:
Q  338 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 416  Q
    ||||| |||| |||||||||||||||||| |  |||||||||||| ||||||||| |  ||||||||||||||||||||    
T  11263709 aaaattgcttctatcctccaaaagcaattatccttgaagctacaaatcctagcttttggctttcctagaatcaattcta 11263787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 42274518 - 42274616
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||| |||||||||| | ||| | || ||||||||||||||||||||  || ||| ||||||||||||||| |  ||||| ||||||||||||||||    
T  42274518 tgtttgatttggctttttagaattgattctatcctccaaaagcaattctccttaaagttacaattcctagcttttggctttcatagaatcaattctaca 42274616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 45150598 - 45150696
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||| | ||| | || |||||||||||| ||||| |  |||||||||||| ||||||||| |   |||||||||||||||||||||    
T  45150598 tgtttggtttggcttttaagaattgtttctatcctccaaaaacaattatccttgaagctacaaatcctagcttttggttttcctagaatcaattctaca 45150696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 416
Target Start/End: Complemental strand, 48254602 - 48254506
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 416  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||    
T  48254602 tgtttggtttgacttttaagaattgattatatcctccaaaagcaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattcta 48254506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 28182370 - 28182468
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||| | ||| |||| |||||||||| ||||||| |  || |||||| |||||||| ||| |  |||||||| |||||||||||||    
T  28182370 tgtttggtttggctttttagaattgcttctatcctccaacagcaattatccttaaagctaaaattcctaacttttggctttcctataatcaattctaca 28182468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 30809842 - 30809904
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    |||||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  30809842 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 30809904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 31813401 - 31813499
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||| ||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  31813401 tgtttagtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 31813499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 415
Target Start/End: Complemental strand, 44610889 - 44610827
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    |||||||||||||||| ||||||||||||||| ||||||| | | |||  |||||||||||||    
T  44610889 ctccaaaagcaattctggttgaagctacaatttctagcttttgagtttattagaatcaattct 44610827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 44328692 - 44328754
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    |||||||||||||| | | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  44328692 ctccaaaagcaattttggctgaagctacaattcctagcttttgagttaactagaatcaattct 44328754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 240 - 446
Target Start/End: Original strand, 44282492 - 44282698
Alignment:
Q  240 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44282492 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 44282591  T
Q  340 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44282592 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 44282691  T
Q  440 tctctgc 446  Q
    || ||||    
T  44282692 tccctgc 44282698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 237 - 446
Target Start/End: Original strand, 40254339 - 40254548
Alignment:
Q  237 aactaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttt 336  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254339 aacttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttt 40254438  T
Q  337 caaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatt 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254439 caaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatt 40254538  T
Q  437 ccatctctgc 446  Q
    ||||| ||||    
T  40254539 ccatccctgc 40254548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 242 - 446
Target Start/End: Original strand, 31786699 - 31786903
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786699 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 31786798  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786799 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 31786898  T
Q  442 tctgc 446  Q
     ||||    
T  31786899 cctgc 31786903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 242 - 446
Target Start/End: Original strand, 14379660 - 14379864
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14379660 agcctccgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 14379759  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14379760 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 14379859  T
Q  442 tctgc 446  Q
     ||||    
T  14379860 cctgc 14379864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 251 - 446
Target Start/End: Complemental strand, 31686984 - 31686789
Alignment:
Q  251 ttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagctttta 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31686984 ttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagctttta 31686885  T
Q  351 tcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatctctgc 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31686884 tcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgc 31686789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 246 - 446
Target Start/End: Complemental strand, 2443868 - 2443667
Alignment:
Q  246 tctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggcttttcaaaatag 344  Q
    |||||||||||||||||||| | |||  ||| |||||||  | |||| ||||||||||||| ||| |||| || |||||||||||||||||||| ||| |    
T  2443868 tctgtttggtttggcttttgtacagctggaaacaattctacaacattccaaaagcaattctacaacatttcaatatgtttggtttggcttttcagaattg 2443769  T
Q  345 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatctct 444  Q
    ||| |||||||||||| |||||||   | ||||||||||||||||||| |  |||| ||||||||||||||||||||||||||| || ||||||||| ||    
T  2443768 cttctatcctccaaaaacaattctccataaagctacaattcctagcttatgccttttctagaatcaattctacaccctcaattccatcaattccatcact 2443669  T
Q  445 gc 446  Q
    ||    
T  2443668 gc 2443667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 37640859 - 37640761
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||  | ||| |||| |||||||||||||||||| |  |||||||||||| || |||||| |  ||||||||||||||||||||||    
T  37640859 tgtttggtttggctttcaagaattgcttctatcctccaaaagcaattatccttgaagctacaaatcttagcttttggctttcctagaatcaattctaca 37640761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 37996718 - 37996816
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||||| ||| |||| ||||||||||||| |||||   || ||||||||||||||| ||| |  ||||||| ||||||||||||||    
T  37996718 tgtttggtttggcttttcataattgcttctatcctccaaaagtaattcaccttaaagctacaattcctaacttttggctttccttgaatcaattctaca 37996816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 323 - 418
Target Start/End: Complemental strand, 3739143 - 3739048
Alignment:
Q  323 ttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||||||||||||| ||| |||| |||| ||||||||||||| |  || |||||||||||||||  || | |||||| ||||||||||||||||    
T  3739143 ttggtttggcttttcataattgcttctatcatccaaaagcaattttccttaaagctacaattcctaatttttgactttcttagaatcaattctaca 3739048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 7473518 - 7473616
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||||||||| |||| | ||| |||| |||||||||||| ||||| |  |||||||||||| ||||| ||| |  |||||| |||||||||||||||    
T  7473518 tgtttggtttggtttttaagaattgcttctatcctccaaaaacaattatccttgaagctacaaatcctaacttttggctttccaagaatcaattctaca 7473616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 17480814 - 17480912
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||| ||||||||||| | ||| | || |||||| ||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  17480814 tgtttagtttggcttttaagaattgattctatccttcaaaagcaattatctttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 17480912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 415
Target Start/End: Original strand, 37551592 - 37551653
Alignment:
Q  354 tccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    ||||||||||||||| |||||||||||||||||||| |||| | ||  ||||||||||||||    
T  37551592 tccaaaagcaattctggttgaagctacaattcctagtttctgagttaactagaatcaattct 37551653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 14033372 - 14033470
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  14033372 tgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 14033470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 43342375 - 43342277
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||| ||||| |||| | ||| | || |||||||||||||||||| |  || ||||||||| | |||||||||  |||| |||||||||||||||||    
T  43342375 tgtttgatttggtttttaagaattgattctatcctccaaaagcaattatccttaaagctacaaattctagcttctagcttttctagaatcaattctaca 43342277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 13892752 - 13892850
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||| |||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  13892752 tgtttgatttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 13892850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 14032877 - 14032975
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||| |||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  14032877 tgtttgatttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 14032975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 35458283 - 35458185
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||| ||||| | ||| | || |||| ||||||||||||| |  || || |||||| ||||| |||||  |||| |||||||||||||||||    
T  35458283 tgtttggtttgacttttaagaattgattctatcatccaaaagcaattatccttaaaactacaaatcctaacttctagcttttctagaatcaattctaca 35458185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 44002684 - 44002742
Alignment:
Q  357 aaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    |||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  44002684 aaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 44002742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 240 - 441
Target Start/End: Complemental strand, 24038269 - 24038068
Alignment:
Q  240 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038269 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 24038170  T
Q  340 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038169 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 24038070  T
Q  440 tc 441  Q
    ||    
T  24038069 tc 24038068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 242 - 446
Target Start/End: Complemental strand, 31431241 - 31431037
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31431241 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 31431142  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31431141 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 31431042  T
Q  442 tctgc 446  Q
     ||||    
T  31431041 cctgc 31431037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 240 - 446
Target Start/End: Original strand, 24246538 - 24246744
Alignment:
Q  240 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24246538 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattatgcaatatttaacatgtttggtttggcttttcaa 24246637  T
Q  340 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24246638 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 24246737  T
Q  440 tctctgc 446  Q
    || ||||    
T  24246738 tccctgc 24246744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 240 - 446
Target Start/End: Complemental strand, 39383165 - 39382959
Alignment:
Q  240 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39383165 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 39383066  T
Q  340 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39383065 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattcca 39382966  T
Q  440 tctctgc 446  Q
    || ||||    
T  39382965 tccctgc 39382959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 243 - 446
Target Start/End: Original strand, 18140375 - 18140578
Alignment:
Q  243 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18140375 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaat 18140474  T
Q  343 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 442  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18140475 agcttttatcctccaaaagcaattttagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 18140574  T
Q  443 ctgc 446  Q
    ||||    
T  18140575 ctgc 18140578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 243 - 446
Target Start/End: Original strand, 49127588 - 49127791
Alignment:
Q  243 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49127588 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaat 49127687  T
Q  343 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 442  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  49127688 agcttttatcctccaaaagcaattttagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 49127787  T
Q  443 ctgc 446  Q
    ||||    
T  49127788 ctgc 49127791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 255 - 441
Target Start/End: Complemental strand, 51834412 - 51834225
Alignment:
Q  255 tttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatt-taacatgtttggtttggcttttcaaaatagcttttatcc 353  Q
    |||| |||||| | ||| |||| |||||||  | |||| ||||||||||||| ||| ||| ||| |||||||||||| ||||||| ||| |||| |||||    
T  51834412 tttgacttttgtacagctagaagcaattctataacattccaaaagcaattctacaacattctaatatgtttggtttgacttttcagaattgcttctatcc 51834313  T
Q  354 tccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 441  Q
    |||||||||||||||   | ||||||||||||||| |||||  |||| |||||||||||| ||||| |||||||| || |||||||||    
T  51834312 tccaaaagcaattctccataaagctacaattcctaacttctggcttttctagaatcaattatacactctcaattccatcaattccatc 51834225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 53404209 - 53404111
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||| |  ||||||| ||||||||||||||||||||  || ||||||||||||||||||| |   |||||||||||||||| ||||    
T  53404209 tgtttggtttggcttttaagcatagcttctatcctccaaaagcaattctccttaaagctacaattcctagcttttggttttcctagaatcaattttaca 53404111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 45105807 - 45105904
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||||| ||| |||| ||||||||| ||||||||||  || |||||| ||||| |||||| || |||| |||||||||||||||||    
T  45105807 tgtttggtttggcttttcagaattgcttatatcctccagaagcaattcttcttaaagctaaaattcatagctt-ttgcttttctagaatcaattctaca 45105904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 52058350 - 52058252
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  |||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  52058350 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 52058252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 418
Target Start/End: Complemental strand, 30418490 - 30418397
Alignment:
Q  325 ggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||||||||| ||||| | || |||||||||||||||||| |  || ||||||||| ||||| ||| |  ||||||||||||||||||||||    
T  30418490 ggtttggcttttaaaaattgattctatcctccaaaagcaattatccttcaagctacaaatcctaacttttagctttcctagaatcaattctaca 30418397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 416
Target Start/End: Complemental strand, 22606458 - 22606362
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 416  Q
    ||||||||||  ||||| | ||| |||| |||||||||||||||||| |   ||||||||||| ||||||||| | ||||||| |||||||||||||    
T  22606458 tgtttggtttaacttttaagaattgcttctatcctccaaaagcaattattcgtgaagctacaaatcctagcttttgactttccaagaatcaattcta 22606362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 318 - 388
Target Start/End: Original strand, 28911579 - 28911649
Alignment:
Q  318 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 388  Q
    ||||||||||||||||| ||| ||| |||| || ||||||||||||||| | | |||||||||||||||||    
T  28911579 catgtttggtttggcttatcagaattgcttctaccctccaaaagcaattgtggatgaagctacaattccta 28911649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 38767791 - 38767889
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||||  ||||| || |  |||||| |||||||||||||||    
T  38767791 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctacaaagcctagtttttggctttccaagaatcaattctaca 38767889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 418
Target Start/End: Complemental strand, 53663732 - 53663635
Alignment:
Q  321 gtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||| |||||||||| | ||| | || |||||||||||||||||| |  || ||||||||||||||| ||| |  |||||||| |||||||||||||    
T  53663732 gtttgatttggctttttagaattgattctatcctccaaaagcaattatccttaaagctacaattcctaacttttggctttcctataatcaattctaca 53663635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 416
Target Start/End: Complemental strand, 28963966 - 28963870
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 416  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||| |||||  |||| |||||||||||||||    
T  28963966 tgtttggtttgacttttaagaattgattatatcctccaaaagcaattattcttaaagctacaaatcctaacttctagcttttctagaatcaattcta 28963870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 415
Target Start/End: Complemental strand, 16203159 - 16203097
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    |||||||||||||| | ||||||||||||||||||||||| | | ||  ||||||||||||||    
T  16203159 ctccaaaagcaattttggttgaagctacaattcctagcttttgagttgactagaatcaattct 16203097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 39732843 - 39732905
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    |||||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  39732843 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 39732905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 415
Target Start/End: Complemental strand, 50523936 - 50523874
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    |||||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  50523936 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 50523874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 392
Target Start/End: Original strand, 49723784 - 49723855
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 392  Q
    ||||||||||||||||| | ||| | || ||||||||||||| |||||| ||| |||||||||||| ||||||    
T  49723784 tgtttggtttggcttttaagaattgtttctatcctccaaaag-aattctcgttaaagctacaattcttagctt 49723855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 415
Target Start/End: Complemental strand, 5937908 - 5937846
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    |||||||||||||| | | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  5937908 ctccaaaagcaattatggatgaagctacaattcctagcttttgagttagctagaatcaattct 5937846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Original strand, 26457118 - 26457183
Alignment:
Q  327 tttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 392  Q
    |||| ||||||| ||| ||||||||||||||||| |||||    |||||||||||||| |||||||    
T  26457118 tttgacttttcagaattgcttttatcctccaaaaacaatttcgattgaagctacaatttctagctt 26457183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 242 - 446
Target Start/End: Complemental strand, 30984507 - 30984303
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30984507 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 30984408  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30984407 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 30984308  T
Q  442 tctgc 446  Q
     ||||    
T  30984307 cctgc 30984303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 242 - 441
Target Start/End: Original strand, 30210394 - 30210593
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210394 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 30210493  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210494 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 30210593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 242 - 446
Target Start/End: Complemental strand, 34774553 - 34774349
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34774553 agcctctgtttggtttggcttttgcaaagccagaatcaattttggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 34774454  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 441  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34774453 tagtttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 34774354  T
Q  442 tctgc 446  Q
     ||||    
T  34774353 cctgc 34774349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 286 - 396
Target Start/End: Complemental strand, 629586 - 629476
Alignment:
Q  286 gagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattc 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  629586 gagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattc 629487  T
Q  386 ctagcttctta 396  Q
    |||||||||||    
T  629486 ctagcttctta 629476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 189774 - 189837
Alignment:
Q  383 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatctctgc 446  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  189774 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgc 189837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 717378 - 717441
Alignment:
Q  383 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatctctgc 446  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  717378 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgc 717441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 383 - 446
Target Start/End: Original strand, 878485 - 878548
Alignment:
Q  383 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatctctgc 446  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  878485 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgc 878548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 35164474 - 35164381
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  35164474 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 35164381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 35802442 - 35802344
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||| ||||| ||||| |||| |||||||||||||||||| |  |||||||||||  ||||||||| |  ||||||||||||||||||||||    
T  35802442 tgtttggtttgacttttaaaaattgcttctatcctccaaaagcaattatccttgaagctacatatcctagcttttggctttcctagaatcaattctaca 35802344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 388
Target Start/End: Original strand, 924099 - 924169
Alignment:
Q  318 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 388  Q
    ||||||||||||| ||||||||||| |||| ||| ||||||||| |||||||||| |||||||||||||||    
T  924099 catgtttggtttgacttttcaaaattgcttctatactccaaaagtaattctagttaaagctacaattccta 924169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 308872 - 308915
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctg 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  308872 agcctctgtttggtttggcttttgcaaagccagaatcaattctg 308915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 45276501 - 45276403
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||| ||||| ||||| ||||| | || |||||||||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  45276501 tgttttgtttgacttttaaaaattgattatatcctccaaaagcaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 45276403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 8416662 - 8416760
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||| |||||||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||| |||||  |||| |||||||||||||||||    
T  8416662 tgtttgatttggcttttaagaattgattctatcctccaaaagcaattatccttaaagctacaaatcctaacttctagcttttctagaatcaattctaca 8416760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 392
Target Start/End: Complemental strand, 36821725 - 36821653
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 392  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||||| |  || ||| ||||||||| |||||    
T  36821725 tgtttggtttggcttttcagaattgcttctatcctccaaaagcaattatccttaaagttacaattccaagctt 36821653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 3590107 - 3590169
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    |||||||| ||||||| ||||||||||||||||||| ||| | | ||  ||||||||||||||    
T  3590107 ctccaaaaacaattctggttgaagctacaattcctaacttttgagttaactagaatcaattct 3590169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 242 - 446
Target Start/End: Complemental strand, 31012608 - 31012404
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31012608 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 31012509  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31012508 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 31012409  T
Q  442 tctgc 446  Q
     ||||    
T  31012408 cctgc 31012404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 242 - 440
Target Start/End: Complemental strand, 25341650 - 25341452
Alignment:
Q  242 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25341650 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 25341551  T
Q  342 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25341550 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 25341452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 35422398 - 35422288
Alignment:
Q  129 ttagcagtctccacctaattagtgataatatttgctaatgaatatgataaatactaactttggactaaccgattgatgactatagtatttgtgaatcctt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35422398 ttagcagtctccacctaattagtgataatatttgctaatgaatatgataaatactaactttggactaaccgattgatgactatagtatttgtgaatcctt 35422299  T
Q  229 tcccttgaaac 239  Q
    |||||||||||    
T  35422298 tcccttgaaac 35422288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 35422541 - 35422426
Alignment:
Q  17 atgtaacatatcttccaagataggactaacttttagttgcttttgttggcttatgaacatatattggctttaaaggtgaagttcctgatgcctgcacttt 116  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35422541 atgtaacatatcttccaagataggactaactttcggttgcttttgttggcttatgaacatatattggctttaaaggtgaagttcctgatgcctgcacttt 35422442  T
Q  117 cggttttgtatattag 132  Q
    ||||||||||||||||    
T  35422441 cggttttgtatattag 35422426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 297 - 428
Target Start/End: Original strand, 41064585 - 41064717
Alignment:
Q  297 aagcaattctgcaatatt-taacatgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttctt 395  Q
    |||||||||| ||| ||| ||| |||||||||||| ||||||| ||| |||| |||||||||||| |||||||   | |||||||||||||||||||||     
T  41064585 aagcaattctacaacattctaatatgtttggtttgccttttcataattgcttctatcctccaaaaacaattctccataaagctacaattcctagcttctg 41064684  T
Q  396 actttcctagaatcaattctacaccctcaattc 428  Q
    ||||| |||||||||||||||||||||||||||    
T  41064685 acttttctagaatcaattctacaccctcaattc 41064717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 25970433 - 25970531
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||| | ||| |||| ||||||||||||| ||||||  || ||||||||||||||||||| |  ||||| ||||||||||||||||    
T  25970433 tgtttggtttggcttttaagaattgcttctatcctccaaaagtaattctctttaaagctacaattcctagcttttggctttcttagaatcaattctaca 25970531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 415
Target Start/End: Original strand, 39857075 - 39857172
Alignment:
Q  318 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    ||||||||||||| ||||||| ||| |||| ||||||||||||| |||||| | |||||||||||||| |||||| | | ||  ||||||||||||||    
T  39857075 catgtttggtttgacttttcagaattgcttctatcctccaaaagtaattctggatgaagctacaattcatagcttttgagttaactagaatcaattct 39857172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 319 - 418
Target Start/End: Original strand, 37371078 - 37371177
Alignment:
Q  319 atgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||||||||||||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||| |||||  |||| |||||||||||||||||    
T  37371078 atgtttggtttggcttttaagaattggttctatcctccaaaagcaattatctttaaagctacaaatcctaacttctagcttttctagaatcaattctaca 37371177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 14999868 - 14999966
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||| | ||| | || ||||||||||||| ||||||  || |||||||||||||||  || |  ||||||||||||||||||||||    
T  14999868 tgtttggtttggctttttagaattgattctatcctccaaaagtaattctccttaaagctacaattcctaatttttggctttcctagaatcaattctaca 14999966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 30825190 - 30825288
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||| ||||| | ||| |||| |||||||||||| |||||||  || ||| ||||||||||||||| |  |||||| |||||||||||||||    
T  30825190 tgtttggtttgcctttttagaattgcttctatcctccaaaaacaattctccttaaagttacaattcctagcttttggctttccaagaatcaattctaca 30825288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 418
Target Start/End: Original strand, 26826384 - 26826480
Alignment:
Q  322 tttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||| | |||  ||| ||||||||||||| ||||||  || ||| ||||||||||| ||| || |||||||| |||||||||||||    
T  26826384 tttggtttggcttttaagaattacttctatcctccaaaagtaattctccttaaaggtacaattcctaactttttcctttcctataatcaattctaca 26826480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 25472863 - 25472765
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |  |||||||||||| || ||||||||   ||| |||||||||||||||||    
T  25472863 tgtttggtttgacttttaagaattgattctatcctccaaaagcaattatccttgaagctacaaatcatagcttctacattttctagaatcaattctaca 25472765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 12909229 - 12909327
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  12909229 tgtttggtttgacttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 12909327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 43664912 - 43664814
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||| ||| |||||||| |||   || |||||||||||||||||| |  || ||||||||||| ||| | | | |||||||||||||||||||||||    
T  43664912 tgtttgttttagcttttcagaattcattctatcctccaaaagcaatttttcttaaagctacaatttctaacctttgactttcctagaatcaattctaca 43664814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 19544572 - 19544634
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    ||||||||| |||| | |||||||||||||||| |||||| | | ||| ||||||||||||||    
T  19544572 ctccaaaagtaattatggttgaagctacaattcatagcttttgagtttactagaatcaattct 19544634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 243 - 446
Target Start/End: Complemental strand, 29542646 - 29542443
Alignment:
Q  243 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29542646 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 29542547  T
Q  343 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29542546 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 29542447  T
Q  443 ctgc 446  Q
    ||||    
T  29542446 ctgc 29542443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 240 - 446
Target Start/End: Original strand, 42663354 - 42663560
Alignment:
Q  240 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42663354 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaa 42663453  T
Q  340 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42663454 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 42663553  T
Q  440 tctctgc 446  Q
    || ||||    
T  42663554 tccctgc 42663560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 237 - 446
Target Start/End: Complemental strand, 3261049 - 3260840
Alignment:
Q  237 aactaagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttt 336  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3261049 aacttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgactttt 3260950  T
Q  337 caaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatt 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3260949 caaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatt 3260850  T
Q  437 ccatctctgc 446  Q
    ||||| ||||    
T  3260849 ccatccctgc 3260840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 240 - 446
Target Start/End: Original strand, 33114954 - 33115160
Alignment:
Q  240 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33114954 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaa 33115053  T
Q  340 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 439  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33115054 aatagtttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 33115153  T
Q  440 tctctgc 446  Q
    || ||||    
T  33115154 tccctgc 33115160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 243 - 446
Target Start/End: Original strand, 14082814 - 14083017
Alignment:
Q  243 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  14082814 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctacaatatttaacatgtttggtttgactttttaaaat 14082913  T
Q  343 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatct 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14082914 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 14083013  T
Q  443 ctgc 446  Q
    ||||    
T  14083014 ctgc 14083017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 415
Target Start/End: Original strand, 2526282 - 2526379
Alignment:
Q  318 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    ||||||||||||||||||||| ||| |||| || || |||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  2526282 catgtttggtttggcttttcagaattgcttctaccccccaaaagcaattctggatgaagctacaattcctagcttttgagttaactagaatcaattct 2526379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 320 - 392
Target Start/End: Complemental strand, 53765 - 53693
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 392  Q
    ||||||||||| ||||||| ||| |||| |||||||||||||||||| | |||||||||||||||||||||||    
T  53765 tgtttggtttgccttttcataattgcttctatcctccaaaagcaattatggttgaagctacaattcctagctt 53693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 27739449 - 27739351
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  27739449 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccgtgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 27739351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 8958599 - 8958502
Alignment:
Q  322 tttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacac 419  Q
    ||||||||| ||||||| ||| | || ||||||| |||| |||||||  || |||||||||||||||  || |  |||||||||||||||||||||||    
T  8958599 tttggtttgacttttcagaattgtttctatcctctaaaaacaattctccttaaagctacaattcctaatttttggctttcctagaatcaattctacac 8958502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 417
Target Start/End: Complemental strand, 37066657 - 37066560
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctac 417  Q
    ||||||||||||||||| | ||| | || ||||||| |||||||||| |  || ||||||||| ||||| |||||  |||| ||||||||||||||||    
T  37066657 tgtttggtttggcttttaagaattggttatatcctctaaaagcaattatcattaaagctacaaatcctaacttctagcttttctagaatcaattctac 37066560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 417
Target Start/End: Complemental strand, 41040234 - 41040137
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctac 417  Q
    ||||||||||||||||| | ||| |||| ||||||||||||  |||| |  |||||||||||| ||||||||| |  |||| | ||||||||||||||    
T  41040234 tgtttggtttggcttttaagaattgcttctatcctccaaaaataattatccttgaagctacaaatcctagcttttggcttttcaagaatcaattctac 41040137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 7073373 - 7073275
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||| ||||| |||| |||   ||||||| |||| |  |||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  7073373 tgtttggtttggcttttaaaaattgcttctatttcccaaaagtaattatccttgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 7073275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 21022730 - 21022632
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||| | ||| | || |||||||| ||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  21022730 tgtttggtttggcttttaagaattgattctatcctcctaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 21022632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 33229204 - 33229302
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  33229204 tgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 33229302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 39236994 - 39236896
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||| | ||| | || |||||||||||| ||||| |   ||||||||||| ||||| ||| | |||||  ||||||||||||||||    
T  39236994 tgtttggtttggcttttaagaattgattctatcctccaaaaacaattatccatgaagctacaaatcctaacttttgacttttgtagaatcaattctaca 39236896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 392
Target Start/End: Original strand, 40979452 - 40979491
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagctt 392  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  40979452 ctccaaaagcaattctggatgaagctacaattcctagctt 40979491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 10900165 - 10900227
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    |||||||||||||||| | ||||||||||||||||| ||| | | ||  ||||||||||||||    
T  10900165 ctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattct 10900227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 19356501 - 19356599
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||||||||| | | | | || ||||||| |||||||||| |  || || |||||| |||| |||||| | ||| |||||||||||||||||    
T  19356501 tgtttggtttggcttttaagagttgattctatcctctaaaagcaattatccttaaaactacaaatccttgcttctaatttttctagaatcaattctaca 19356599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 415
Target Start/End: Complemental strand, 19375471 - 19375409
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    |||||||||||||||| | ||||||||||||||||| ||| | | ||  ||||||||||||||    
T  19375471 ctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattct 19375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 240 - 441
Target Start/End: Original strand, 30018771 - 30018972
Alignment:
Q  240 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30018771 taagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 30018870  T
Q  340 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30018871 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctatcttcttactttcctagaatcaattctacaccctcaattctattaattcca 30018970  T
Q  440 tc 441  Q
    ||    
T  30018971 tc 30018972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 246 - 428
Target Start/End: Complemental strand, 31746359 - 31746179
Alignment:
Q  246 tctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggcttttcaaaatag 344  Q
    |||||||||||||||||||| | |   |||| |||||||  | | |||||||||||||||| ||| |||  || |||||||||||| ||||||||||| |    
T  31746359 tctgtttggtttggcttttgtaca---agaagcaattctacaacttttcaaaagcaattctacaacattccaatatgtttggtttgacttttcaaaattg 31746263  T
Q  345 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 428  Q
    ||| ||||||||||||||||||||   |  |||||||||||||| ||| |  |||| ||||||||||||||||| |||||||||    
T  31746262 cttctatcctccaaaagcaattctccatatagctacaattcctaacttatggcttttctagaatcaattctacatcctcaattc 31746179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 415
Target Start/End: Original strand, 4146810 - 4146907
Alignment:
Q  318 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    ||||||||||||||||||||| ||| |||| || || |||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  4146810 catgtttggtttggcttttcagaattgcttctaccccccaaaagcaattctggatgaagctacaattcctagcttttgagttaactagaatcaattct 4146907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 418
Target Start/End: Complemental strand, 21517455 - 21517357
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  21517455 tgtttggtttgacttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 21517357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 392
Target Start/End: Original strand, 30134180 - 30134219
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagctt 392  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  30134180 ctccaaaagcaattctggttgaagctacaatttctagctt 30134219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 365591 - 365689
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||||||||| ||||| | ||| | || |||| ||||||||||||| |  || ||||||||| ||||| ||||| ||||| ||||| |||||| ||||    
T  365591 tgtttggtttgacttttaagaattgattctatcatccaaaagcaattatccttaaagctacaaatcctaacttctaacttttctagactcaattttaca 365689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 415
Target Start/End: Complemental strand, 20838560 - 20838498
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    |||||||||||||||| ||||||||||||| ||||| ||| | | ||| ||| ||||||||||    
T  20838560 ctccaaaagcaattctggttgaagctacaaatcctaacttttgagtttactataatcaattct 20838498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 415
Target Start/End: Original strand, 27825057 - 27825119
Alignment:
Q  353 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 415  Q
    |||||||||||||| | ||||||||||||||||||| ||| | | ||  ||||||||||||||    
T  27825057 ctccaaaagcaattatggttgaagctacaattcctaacttttcagttaactagaatcaattct 27825119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 388
Target Start/End: Original strand, 16815 - 16883
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 388  Q
    ||||||||||||||||| | ||| | || ||||||||||||||||||||| || |||||||||||||||    
T  16815 tgtttggtttggctttttagaattgattctatcctccaaaagcaattctaattaaagctacaattccta 16883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 418
Target Start/End: Original strand, 91535 - 91634
Alignment:
Q  321 gtttggtttggcttttcaaaatagcttttatcctccaaaagca--attctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    |||||||||||||||| | ||| | || |||||||||||||||  |||||| || ||||||||||||||| ||| |  ||||| |||||  |||||||||    
T  91535 gtttggtttggctttttagaattgattctatcctccaaaagcaatattctacttaaagctacaattcctaacttttggctttcatagaacaaattctaca 91634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 4090 - 4188
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 418  Q
    ||||| ||||||||||| | ||| | || ||||||| |||||||||| |  || |||||| || |||||||||||  |||| ||| |||||||||||||    
T  4090 tgtttagtttggcttttaagaattgattctatcctcgaaaagcaattatcattaaagctaaaaatcctagcttctagcttttctaaaatcaattctaca 4188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 416
Target Start/End: Original strand, 37697 - 37791
Alignment:
Q  320 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 416  Q
    ||||||||||||||||| | ||| | || |||||||||||| ||||| |  || ||||||||| |  ||||||||  |||| |||||||||||||||    
T  37697 tgtttggtttggcttttaagaattgattctatcctccaaaaacaattatcctttaagctacaaat--tagcttctagcttttctagaatcaattcta 37791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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