View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5165_high_65 (Length: 210)

Name: NF5165_high_65
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5165_high_65
NF5165_high_65
[»] chr4 (6 HSPs)
chr4 (1-194)||(7655475-7655668)
chr4 (1-186)||(7637655-7637843)
chr4 (19-182)||(7629227-7629393)
chr4 (36-188)||(7606862-7607014)
chr4 (1-182)||(7615820-7616004)
chr4 (115-188)||(39098372-39098445)
[»] chr7 (4 HSPs)
chr7 (1-170)||(8910525-8910697)
chr7 (19-182)||(8935448-8935614)
chr7 (23-182)||(8934507-8934669)
chr7 (118-182)||(8930052-8930116)
[»] chr6 (2 HSPs)
chr6 (49-195)||(11969547-11969693)
chr6 (22-188)||(6501119-6501285)
[»] chr3 (2 HSPs)
chr3 (36-182)||(40146736-40146882)
chr3 (39-188)||(8103105-8103254)
[»] scaffold0190 (1 HSPs)
scaffold0190 (49-77)||(5071-5099)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 7655668 - 7655475
Alignment:
Q  1 cgctctagcgttggggagttagatatttgatgatgacaaccacgtgacatttcagcccacgaattgatgaaatgccacgtggactgcccgtcagctacaa 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  7655668 cgctccagcgttggggagttagatatttgatgatgacaaccacgtgacatttcagcccacgaattgatgaaatgccacgtggactgtccgtcagctacga 7655569  T
Q  101 catggttgaaattaaagccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgatgtgccttcatagttcctaac 194  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  7655568 catggttgaaattaaagccaatgaagatgccgtcaactagctccgtgacttgaacagccaacaatggttttgatgtgccttcgtagtttctaac 7655475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 7637655 - 7637843
Alignment:
Q  1 cgctctagcgttggggagttagatatttgatgatgacaaccac---gtgacatttcagcccacgaattgatgaaatgccacgtggactgcccgtcagcta 97  Q
    |||||||| |||||||  |||||||||||||||||||||| ||   |||| ||||||||||| ||||||||||||||||||  |||||  |||||| | |    
T  7637655 cgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgagatttcagcccaggaattgatgaaatgccacacggactttccgtcaacga 7637754  T
Q  98 caacatggttgaaattaa-agccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgatgtgccttcatag 186  Q
    |||||||||| |||| |  | |||||||| || |||||||||||||| || |||||||| ||||||||||||||||||||||||||||||    
T  7637755 caacatggtt-aaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttttgatgtgccttcatag 7637843  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 7629227 - 7629393
Alignment:
Q  19 ttagatatttgatgatgacaaccac---gtgacatttcagcccacgaattgatgaaatgccacgtggactgcccgtcagctacaacatggttgaaattaa 115  Q
    |||||||||||||||||||||| ||   |||| ||||||||||| ||||||||||||||||||  |||||  |||||| | ||||||||||||||  |      
T  7629227 ttagatatttgatgatgacaacaactacgtgagatttcagcccatgaattgatgaaatgccacacggactttccgtcaacaacaacatggttgaatgtgc 7629326  T
Q  116 agccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgatgtgccttc 182  Q
    | ||||| ||||  |||||||||||||| || |||||||||||||||||||||||||| ||||||||    
T  7629327 aaccaataaagacaccgtcaactagctccgttacttgaacagccaacaatggttttgacgtgccttc 7629393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 36 - 188
Target Start/End: Original strand, 7606862 - 7607014
Alignment:
Q  36 acaaccacgtgacatttcagcccacgaattgatgaaatgccacgtggactgcccgtcagctacaacatggttgaaattaaagccaatgaagatgccgtca 135  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||  |||||  |||||| | ||||||||||||||     | |||||||| || ||||||    
T  7606862 acaaccgcgtgatatttcagcccatgaattgatgaaatgccacacggactttccgtcaacgacaacatggttgaaggagcaaccaatgaaaataccgtca 7606961  T
Q  136 actagctctgtgacttgaacagccaacaatggttttgatgtgccttcatagtt 188  Q
    |||||||| || | |||||||||||||||||||||||| ||||||||||||||    
T  7606962 actagctccgttatttgaacagccaacaatggttttgacgtgccttcatagtt 7607014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 7615820 - 7616004
Alignment:
Q  1 cgctctagcgttggggagttagatatttgatgatgacaaccac---gtgacatttcagcccacgaattgatgaaatgccacgtggactgcccgtcagcta 97  Q
    |||||||| |||||||  |||||||||||||||||||||| ||   |||| ||||||||||| ||||||||||||||||||   ||||  |||||| | |    
T  7615820 cgctctagtgttgggggtttagatatttgatgatgacaacaactacgtgatatttcagcccatgaattgatgaaatgccacacagactctccgtcaacga 7615919  T
Q  98 caacatggttgaaattaaagccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgatgtgccttc 182  Q
    |||||||||||||     | ||||| || || |||||||||||||| || |||||||| |||||||| |||||||| ||||||||    
T  7615920 caacatggttgaacgagcaaccaataaaaataccgtcaactagctccgttacttgaactgccaacaacggttttgaggtgccttc 7616004  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 39098372 - 39098445
Alignment:
Q  115 aagccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgatgtgccttcatagtt 188  Q
    ||||||||||| || || ||||| ||||| || |||||||| || | ||||||||||||||||||||| |||||    
T  39098372 aagccaatgaaaataccatcaacaagctcagtaacttgaactgcaagcaatggttttgatgtgccttcgtagtt 39098445  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 8910697 - 8910525
Alignment:
Q  1 cgctctagcgttggggagttagatatttgatgatgacaaccac---gtgacatttcagcccacgaattgatgaaatgccacgtggactgcccgtcagcta 97  Q
    |||||||| |||||||  ||||||||||||| |||||||| ||   |||| ||||||||||| ||||| ||||||||||||  |||||  |||||| | |    
T  8910697 cgctctagtgttgggggtttagatatttgataatgacaacaactacgtgagatttcagcccaggaattaatgaaatgccacacggactttccgtcaacga 8910598  T
Q  98 caacatggttgaaatta-aagccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttt 170  Q
    |||||||||| |||| |  | |||||||| || |||||||||||||| || |||||||| ||||||||||||||    
T  8910597 caacatggtt-aaatgagcaaccaatgaaaataccgtcaactagctccgttacttgaactgccaacaatggttt 8910525  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 8935614 - 8935448
Alignment:
Q  19 ttagatatttgatgatgacaaccac---gtgacatttcagcccacgaattgatgaaatgccacgtggactgcccgtcagctacaacatggttgaaattaa 115  Q
    |||||||||||||||||||||| ||   |||| ||||||||||| ||||||||||||||||||   ||||  ||||||   ||| | ||||| |||| |     
T  8935614 ttagatatttgatgatgacaacaactacgtgagatttcagcccaagaattgatgaaatgccacacagactttccgtcaatgacagcgtggtt-aaatgag 8935516  T
Q  116 -agccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgatgtgccttc 182  Q
     | |||||||| || ||||||| || ||| || |||||||| ||||||||||||||||||||||||||    
T  8935515 caaccaatgaaaataccgtcaattaactcagttacttgaactgccaacaatggttttgatgtgccttc 8935448  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 182
Target Start/End: Complemental strand, 8934669 - 8934507
Alignment:
Q  23 atatttgatgatgacaaccac---gtgacatttcagcccacgaattgatgaaatgccacgtggactgcccgtcagctacaacatggttgaaattaa-agc 118  Q
    |||||||||||||||||| ||   |||| ||||||||||| ||||||||||||||||||   ||||  ||||||   ||| | ||||| |||| |  | |    
T  8934669 atatttgatgatgacaacaactacgtgagatttcagcccatgaattgatgaaatgccacacagactttccgtcaatgacagcgtggtt-aaatgagcaac 8934571  T
Q  119 caatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgatgtgccttc 182  Q
    ||||||| || ||||||| || ||| || |||||||| ||||||||||||||||||||||||||    
T  8934570 caatgaaaataccgtcaattaactccgttacttgaactgccaacaatggttttgatgtgccttc 8934507  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 8930116 - 8930052
Alignment:
Q  118 ccaatgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgatgtgccttc 182  Q
    |||||||| || ||||||| || ||| || |||||||  ||||||||||||||||||||| ||||    
T  8930116 ccaatgaaaataccgtcaattaactcagttacttgaaatgccaacaatggttttgatgtgacttc 8930052  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 195
Target Start/End: Original strand, 11969547 - 11969693
Alignment:
Q  49 atttcagcccacgaattgatgaaatgccacgtggactgcccgtcagctacaacatggttgaaattaaagccaatgaagatgccgtcaactagctctgtga 148  Q
    ||||||||||| ||||||||||||||||| ||||||   |||||| |  | ||||| ||||   ||||||||||||||||||| ||||||| |||||| |    
T  11969547 atttcagcccatgaattgatgaaatgccaagtggacactccgtcaacggcgacatgattgattgtaaagccaatgaagatgccatcaactaactctgtta 11969646  T
Q  149 cttgaacagccaacaatggttttgatgtgccttcatagttcctaact 195  Q
    |||| || || | |||||| | |||||| ||||||||||| ||||||    
T  11969647 cttggactgcaagcaatggctctgatgtcccttcatagtttctaact 11969693  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 6501119 - 6501285
Alignment:
Q  22 gatatttgatgatgacaaccacgtgacatttcagcccacgaattgatgaaatgccacgtggactgcccgtcagctacaacatggttgaaattaaagccaa 121  Q
    |||||||||| |  |||||||||||| ||||||||||| ||| |||| ||||||||| ||||||  ||  |||  || |||||||||||  |||| ||||    
T  6501119 gatatttgattacaacaaccacgtgaaatttcagcccaggaactgataaaatgccacatggactttccaccagtgaccacatggttgaatctaaacccaa 6501218  T
Q  122 tgaagatgccgtcaactagctctgtgacttgaacagccaacaatggttttgatgtgccttcatagtt 188  Q
    | ||||  ||| |||||| |||||| ||||| || || | ||||||||||||| ||||||| |||||    
T  6501219 taaagacaccgccaactaactctgtcacttgcactgcaagcaatggttttgatatgccttcgtagtt 6501285  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 40146882 - 40146736
Alignment:
Q  36 acaaccacgtgacatttcagcccacgaattgatgaaatgccacgtggactgcccgtcagctacaacatggttgaaattaaagccaatgaagatgccgtca 135  Q
    ||||||||| || ||||  ||||| ||||| |||||| |||| |||||||  |||||| | ||  ||||||| ||  |||| |||||||||| |||||||    
T  40146882 acaaccacgcgagattttcgcccatgaattaatgaaaagccatgtggactctccgtcaacaaccgcatggttaaatgtaaaaccaatgaagaagccgtca 40146783  T
Q  136 actagctctgtgacttgaacagccaacaatggttttgatgtgccttc 182  Q
    |||| |||||| ||||| ||||| |||||||||| ||||||||||||    
T  40146782 actaactctgtcacttgcacagctaacaatggttgtgatgtgccttc 40146736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 39 - 188
Target Start/End: Original strand, 8103105 - 8103254
Alignment:
Q  39 accacgtgacatttcagcccacgaattgatgaaatgccacgtggactgcccgtcagctacaacatggttgaaattaaagccaatgaagatgccgtcaact 138  Q
    ||||||||| ||||||||||||||||| ||||||| ||| |  ||    || ||| | || |||||||| ||| |||| ||||| |||||||||||||||    
T  8103105 accacgtgagatttcagcccacgaattaatgaaataccatgccgaagttccatcaacaaccacatggttaaaagtaaaaccaataaagatgccgtcaact 8103204  T
Q  139 agctctgtgacttgaacagccaacaatggttttgatgtgccttcatagtt 188  Q
    | |||||| ||||| || || |||||||||| |||||||||||| |||||    
T  8103205 aactctgtcacttgcacggcaaacaatggttgtgatgtgccttcgtagtt 8103254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 5071 - 5099
Alignment:
Q  49 atttcagcccacgaattgatgaaatgcca 77  Q
    |||||||||||||||||||||||||||||    
T  5071 atttcagcccacgaattgatgaaatgcca 5099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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