View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165_low_10 (Length: 440)
Name: NF5165_low_10
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 33279417 - 33278999
Alignment:
| Q |
1 |
agtttaaagcaataaggctaatcatactttgtcctatgaaagactttagtataacctctactctaagctctttttaacttatttcattaagtttcacggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33279417 |
agtttaaagcaataaggctaatcatactttgtcctatgaaagactttagtataacctctactctaagctctttttaacttatttcattaagtttcacggg |
33279318 |
T |
|
| Q |
101 |
taaactttctaaaaattatcttattccacaaccttccatttaacataaccatttattgaacaaacttttaactataaactactataacaaagc-ctcgta |
199 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||| |
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| T |
33279317 |
taaactttctaaaagttatcttattccacaaccttccatttaacataaccatttattgaacaaactttaaactataaacta---taacaaagcactcgta |
33279221 |
T |
|
| Q |
200 |
gtttaggggcatcattgagctaagtgtgtacgagctagtgttcagtggtagttggtttaaacgtggcctgcacatgaagaaaacattaaagagctcttta |
299 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33279220 |
gtttaggggcatcattgagctaagtgtgtacgagctagtgttcagtggtagttggtttaaacgtggcctgcacatgaagaaaacattaaagagctcttta |
33279121 |
T |
|
| Q |
300 |
tgaagtaaacttcctcttactttcgtcatgcatgtgcaagaaagtgcaaaacctattactttcatggaaatgttacaagctaccgtaagctagtagtagg |
399 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33279120 |
tgaagcaaacttcctcttactttcgtcatgcatgtgcaagaaagtgcaaaacttattactttcatggaaatgttacaagctaccgtaagctagtagtagg |
33279021 |
T |
|
| Q |
400 |
gaacgccatctaagaacgccgt |
421 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
33279020 |
gaacgccatctaagaacgccgt |
33278999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 3 - 181
Target Start/End: Complemental strand, 23780284 - 23780106
Alignment:
| Q |
3 |
tttaaagcaataaggctaatcatactttgtcctatgaaagactttagtataacctctactctaagctctttttaacttatttcattaagtttcacgggta |
102 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23780284 |
tttaaagcaataatgctaatcatactttgtcctatgaaagactttagtataatctctactctaagctctttttaacttatttcattaagtttcacgggta |
23780185 |
T |
|
| Q |
103 |
aactttctaaaaattatcttattccacaaccttccatttaacataaccatttattgaacaaacttttaactataaacta |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23780184 |
aactttctaaaaattatcttattccacaaccttccatttaacataaccatttattgagcaaacttttaactataaacta |
23780106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 23779834 - 23779777
Alignment:
| Q |
203 |
taggggcatcattgagctaagtgtgtacgagctagtgttcagtggtagttggtttaaa |
260 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23779834 |
taggggcatcattgagctaagtgtgtacgagctagtgttctgtggtagttggtttaaa |
23779777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 260
Target Start/End: Complemental strand, 23756107 - 23756045
Alignment:
| Q |
198 |
tagtttaggggcatcattgagctaagtgtgtacgagctagtgttcagtggtagttggtttaaa |
260 |
Q |
| |
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||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||| |
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| T |
23756107 |
tagtttaggggtatcattgagctaagtgtgtgtgagctagtgttctgtggtagttggcttaaa |
23756045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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