View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165_low_15 (Length: 416)
Name: NF5165_low_15
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 27422713 - 27422930
Alignment:
| Q |
18 |
atatagtgttgcgtttgttgcccttcaaaattgacgctcctatattat-ttatttaatcatgttggcgattcaggcgcgtaaagggaattccttacctat |
116 |
Q |
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| T |
27422713 |
atatagtgttgcgtttgttgcccttcaaaattgacgctcctatattatgttatttaatcatgttggcgattcaggcgcgtaaagggaattccttacctat |
27422812 |
T |
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| Q |
117 |
tttggcttgttgaagtctttagccgcttattaacaggtggaagcaagccatttatttctgcttggattatgtgttggtggctactgctttgtagctgaca |
216 |
Q |
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| T |
27422813 |
tttggcttgttgaagtctttagccgcttattaacaggtggaagcaagccatttatttctgcttggattatgtgttggtggctactgctttgtagctgaca |
27422912 |
T |
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| Q |
217 |
aattgtgttgtagggggt |
234 |
Q |
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| T |
27422913 |
aattgtgttgtacggggt |
27422930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 27423075 - 27423146
Alignment:
| Q |
254 |
cacatcatgaattccaacactgtgatttcaaccacgagccccaaaactcatcgcgtcactgcagcctcatct |
325 |
Q |
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| T |
27423075 |
cacatcatgaattccaacactgtgatttcaaccacgagccccaaaactcatcgcgtcactgcagcctcatct |
27423146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 27423147 - 27423199
Alignment:
| Q |
355 |
tacacacattcgcgagctgcaagcattcttttgcttcctattatcagtattat |
407 |
Q |
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| T |
27423147 |
tacacacattcgcgagctgcaagcattcttttgcttcccattatcagtattat |
27423199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 19683642 - 19683587
Alignment:
| Q |
101 |
ggaattccttacctattttggcttgttgaagtctttagccgcttattaacaggtgga |
157 |
Q |
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| T |
19683642 |
ggaactccttaattattttggctt-ttgaagtctttagctgcttattaacaggtgga |
19683587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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