View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165_low_17 (Length: 405)
Name: NF5165_low_17
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 39580733 - 39581122
Alignment:
| Q |
1 |
tgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaatattctttaattgaaag-ggagtt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39580733 |
tgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaatattctttaattgaaagcggagtt |
39580832 |
T |
|
| Q |
100 |
tatatcaaaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39580833 |
tatatcaaaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgt |
39580932 |
T |
|
| Q |
200 |
accatgtaagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39580933 |
accatgtaagtgttgtttggtacggttttgaattcgtagaaagatttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtg |
39581032 |
T |
|
| Q |
300 |
atgatgattgacttgttactttggagcttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaacgttgttacttt |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39581033 |
atgatgattgacttgttactttggagcttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaacgttgttacttt |
39581122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 39521548 - 39521935
Alignment:
| Q |
1 |
tgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaatattctttaattgaaagggagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | | ||||||||| | |||| ||||| | | || | ||||| |
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| T |
39521548 |
tgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttttactaaaggagagttg |
39521647 |
T |
|
| Q |
101 |
ata------tca------aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaaga |
188 |
Q |
| |
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| ||| ||||| ||||||||| |||||| |||| |||||| |||||||||||| |||||| ||||||||| |||||||| ||||| |
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| T |
39521648 |
gtggtgttttcagcgttgaaattatgtaacagaaggaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaaga |
39521747 |
T |
|
| Q |
189 |
aatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaaagtgg |
288 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||||||||||||| ||| |||| |||||| |||| || |||||||||||| |||||||||| |
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| T |
39521748 |
aatggaaacgtaccatgtaagtgttgcttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaa----- |
39521842 |
T |
|
| Q |
289 |
tgttgatagtgatgatgattgacttgttactttggag---cttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaacgttgtta |
385 |
Q |
| |
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|| | || |||||||||||||||||||||| |||| |||||| | | ||||||| |||| | ||||||||||||||||||||| ||||||| |
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| T |
39521843 |
----gaca---ctggtgattgacttgttactttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataaaggttgtta |
39521935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 107 - 385
Target Start/End: Original strand, 39544459 - 39544725
Alignment:
| Q |
107 |
aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgt |
206 |
Q |
| |
|
||||||||||||||| |||||| || | ||||| ||||||||||||| |||||| ||||||||| |||||||| |||||||||||||| |||||||| |
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|
| T |
39544459 |
aaattttgtaacagaatgaaaccagggactgaaacattgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacataccatgt |
39544558 |
T |
|
| Q |
207 |
aagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatga |
306 |
Q |
| |
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| ||||||||||||| ||| ||||| ||| |||||| |||| ||||||| |||||||||||||||||||||||| | | || ||| |
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| T |
39544559 |
aggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaaa---------aca---ctggtga |
39544646 |
T |
|
| Q |
307 |
ttgacttgttactttggagcttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaacgttgtta |
385 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||| || |||||||||||||||||||||||||||| ||||||| |
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|
| T |
39544647 |
ttgacttgttactttggagctttttctgaaacttgtttttgggtaagtagggtttgattcaccaatataaaggttgtta |
39544725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 107 - 283
Target Start/End: Original strand, 39525163 - 39525339
Alignment:
| Q |
107 |
aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgt |
206 |
Q |
| |
|
||||||||||||||| |||||| || | |||||| ||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||||||||| |
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|
| T |
39525163 |
aaattttgtaacagaatgaaaccagggactgaaacggtgaattttgcagtggaaaggttaagtggtgaagagaatgaaaagaaatggaaacgtaccatgt |
39525262 |
T |
|
| Q |
207 |
aagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaa |
283 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| ||||| | |||| | ||||| ||||||||||||||||||||||| |
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|
| T |
39525263 |
aggtgttgtttggtacggttttgaactcgtataaagattcggaatgaaatatccttgctgtttggtagagaggtgaa |
39525339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 107 - 283
Target Start/End: Original strand, 39511420 - 39511596
Alignment:
| Q |
107 |
aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgt |
206 |
Q |
| |
|
||||||||||||||| |||||| |||| ||||| ||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||||| | |
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|
| T |
39511420 |
aaattttgtaacagaatgaaaccaggaactgaaacagtgaattttgcagtggaaagtttagttggtgtagagaatgaaaggaaatggaaacgtaccatat |
39511519 |
T |
|
| Q |
207 |
aagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaa |
283 |
Q |
| |
|
| ||||||||||| | ||||||||||||||| |||| | |||| |||| || |||| ||||||||||||| |||| |
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|
| T |
39511520 |
aggtgttgtttgggatggttttgaattcgtaccaagattcggaacggaaaatccttgcagtttggtagagagatgaa |
39511596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 107 - 283
Target Start/End: Original strand, 39576311 - 39576487
Alignment:
| Q |
107 |
aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgt |
206 |
Q |
| |
|
||||| ||||||||| |||||| |||| ||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||| | |
|
|
| T |
39576311 |
aaattatgtaacagaaggaaaccaggaacggaaatgttgaattttgcagtggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatat |
39576410 |
T |
|
| Q |
207 |
aagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaa |
283 |
Q |
| |
|
||||||||||||||| ||| ||||||||| | || | ||| |||| || ||||||||||||| ||||||||| |
|
|
| T |
39576411 |
aagtgttgtttggtatggtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaa |
39576487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 39576193 - 39576249
Alignment:
| Q |
1 |
tgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatctttt |
57 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
39576193 |
tgcattaacaaacgcaaatgatgatgtttgaggtgtgaatatgattttgaatctttt |
39576249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 39544341 - 39544424
Alignment:
| Q |
1 |
tgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaatattcttt |
84 |
Q |
| |
|
|||||||| |||||||||||| || ||||||||||||||||||||| |||||||||| | | ||||||||| | |||| ||||| |
|
|
| T |
39544341 |
tgcattaaaaaacgcaaatgaagatgtttgaggtgtgaaagtgattgtgaatctttttctgatgattttaacgtaatactcttt |
39544424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 39525345 - 39525433
Alignment:
| Q |
301 |
tgatgattgacttgttactttggagcttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaacgttgttacttt |
389 |
Q |
| |
|
|||||||||||| ||| || ||||||||||||||||| |||||| || || | ||||||||||| ||||||||||| || ||||||| |
|
|
| T |
39525345 |
tgatgattgactggtttctatggagcttttgctgaaacttgttttagggtagttggggtttgattccccaatataaactttattacttt |
39525433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 39511306 - 39511358
Alignment:
| Q |
5 |
ttaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatctttt |
57 |
Q |
| |
|
|||||||| || | |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39511306 |
ttaacaaatgcgagtgatgatttttgaggtgtgaaagtgattttgaatctttt |
39511358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 39525045 - 39525128
Alignment:
| Q |
1 |
tgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaatattcttt |
84 |
Q |
| |
|
||||||| |||| |||||||||| ||||||||||||| |||||||||||| |||| | | ||||||||| | |||| ||||| |
|
|
| T |
39525045 |
tgcattagcaaaggcaaatgatgctttttgaggtgtgaacgtgattttgaatttttttctgatgattttaaggtaatactcttt |
39525128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 3331579 - 3331509
Alignment:
| Q |
149 |
tttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttgg |
219 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||| || ||||||||||||||||||||| ||||||||||| |
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|
| T |
3331579 |
tttgcagtggaaaggttaattggtgaagagaatgaaaggaaatggaaacgtaccatgtaggtgttgtttgg |
3331509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3331313 - 3331271
Alignment:
| Q |
1 |
tgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtg |
43 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
3331313 |
tgcattaacaaatgcaaatgatgatgtttgaggtgtgaaagtg |
3331271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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