View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5165_low_19 (Length: 367)

Name: NF5165_low_19
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5165_low_19
NF5165_low_19
[»] chr1 (12 HSPs)
chr1 (217-343)||(12425251-12425372)
chr1 (111-211)||(47661474-47661574)
chr1 (111-211)||(45330821-45330921)
chr1 (129-211)||(26606765-26606847)
chr1 (136-211)||(50269135-50269210)
chr1 (129-211)||(41459235-41459317)
chr1 (129-214)||(5845512-5845597)
chr1 (111-150)||(47505891-47505930)
chr1 (105-155)||(45829130-45829180)
chr1 (115-152)||(38119607-38119644)
chr1 (182-211)||(49854439-49854468)
chr1 (119-155)||(42572771-42572807)
[»] chr3 (3 HSPs)
chr3 (114-211)||(6928736-6928833)
chr3 (112-195)||(30252548-30252632)
chr3 (135-201)||(51325957-51326023)
[»] chr8 (2 HSPs)
chr8 (111-211)||(35555438-35555538)
chr8 (112-211)||(35555179-35555278)
[»] chr4 (7 HSPs)
chr4 (109-211)||(46439566-46439668)
chr4 (115-211)||(72515-72611)
chr4 (130-211)||(41933647-41933728)
chr4 (115-153)||(9013879-9013917)
chr4 (135-201)||(40334448-40334514)
chr4 (115-155)||(8111425-8111465)
chr4 (115-155)||(30704041-30704081)
[»] chr2 (6 HSPs)
chr2 (129-211)||(19694204-19694287)
chr2 (130-211)||(31567908-31567989)
chr2 (135-211)||(40539124-40539201)
chr2 (111-201)||(16327392-16327486)
chr2 (115-155)||(6637557-6637597)
chr2 (129-209)||(6638035-6638115)
[»] chr7 (4 HSPs)
chr7 (120-211)||(47669574-47669666)
chr7 (115-191)||(9491394-9491471)
chr7 (115-155)||(16674792-16674832)
chr7 (115-155)||(17649160-17649200)
[»] chr6 (3 HSPs)
chr6 (115-198)||(24085208-24085292)
chr6 (136-211)||(17596907-17596983)
chr6 (115-147)||(28362732-28362764)
[»] chr5 (4 HSPs)
chr5 (129-211)||(27532641-27532723)
chr5 (136-205)||(41065857-41065926)
chr5 (136-211)||(13665382-13665458)
chr5 (115-149)||(36503102-36503136)
[»] scaffold0303 (1 HSPs)
scaffold0303 (48-91)||(20299-20342)
[»] scaffold0011 (1 HSPs)
scaffold0011 (115-147)||(236261-236293)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 217 - 343
Target Start/End: Original strand, 12425251 - 12425372
Alignment:
Q  217 attccttcaaagttttcaactttcaatcaatttctccaatctcattctctcactctctcacaatgcctctt---ccttcttttcacaagctcatttttcc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||   |||||||| |||||||||||||||||    
T  12425251 attccttcaaagttttcaactttcaatcaatttctccaatctcattctctcac--------aatgcctcttcttccttctttccacaagctcatttttcc 12425342  T
Q  314 aacaacccttcaatctaagcaattggtaac 343  Q
    ||||||||||||||||||||||||||||||    
T  12425343 aacaacccttcaatctaagcaattggtaac 12425372  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 47661474 - 47661574
Alignment:
Q  111 gtttactgccgagaaaaacctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgtgtttc 210  Q
    ||||||||||||||||||||||| || |||| ||||||| ||||||||||| ||||||||||||| | |||||| ||||||| |||||||||||||||||    
T  47661474 gtttactgccgagaaaaacctcggtaattaattgcagccagtttcgtgtttcctcgacagttaactaccgagggatattttggtattttactcgtgtttc 47661573  T
Q  211 t 211  Q
    |    
T  47661574 t 47661574  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 45330921 - 45330821
Alignment:
Q  111 gtttactgccgagaaaaacctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgtgtttc 210  Q
    |||||||  ||| |||||||||| |||||||||||||| |||||||||||| ||||||| ||||| ||||   | ||||||  |||||||||||||||||    
T  45330921 gtttactatcgaaaaaaacctcggtagttaactgcagctggtttcgtgtttcctcgacaattaactatcggaagatattttagtattttactcgtgtttc 45330822  T
Q  211 t 211  Q
    |    
T  45330821 t 45330821  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 26606847 - 26606765
Alignment:
Q  129 cctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgtgtttct 211  Q
    ||||| |||||||||| || | ||||||| ||| |||| |||||||  | |||||||||||||| ||||||||||||||||||    
T  26606847 cctcggtagttaactgtagtcagtttcgtatttcctcggcagttaattaccgaggggtattttggtattttactcgtgtttct 26606765  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 50269135 - 50269210
Alignment:
Q  136 agttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgtgtttct 211  Q
    |||||||||||| ||||||  | ||| ||||||| ||||| | ||||||||||||| || ||||||||||||||||    
T  50269135 agttaactgcagtcggttttctttttcctcgacacttaactaccgaggggtattttcatcttttactcgtgtttct 50269210  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 41459235 - 41459317
Alignment:
Q  129 cctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgtgtttct 211  Q
    ||||| |||||||||||||| |||||  | ||| |||| ||||||||  ||||||||||||||| ||||||||  ||||||||    
T  41459235 cctcggtagttaactgcagctggttttatttttcctcggcagttaactgtcgaggggtattttggtattttacatgtgtttct 41459317  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 214
Target Start/End: Original strand, 5845512 - 5845597
Alignment:
Q  129 cctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgtgtttcttag 214  Q
    ||||| ||||||||||||||||||||  | ||| |||| |||||||| |||||| ||||||||  | ||||||  |||||||||||    
T  5845512 cctcggtagttaactgcagccggttttatttttcctcggcagttaactatcgagaggtattttcgtcttttacatgtgtttcttag 5845597  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 47505891 - 47505930
Alignment:
Q  111 gtttactgccgagaaaaacctcgatagttaactgcagccg 150  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  47505891 gtttactgccgaggaaatcctcgatagttaactgcagccg 47505930  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 45829130 - 45829180
Alignment:
Q  105 tcaactgtttactgccgagaaaaacctcgatagttaactgcagccggtttc 155  Q
    ||||| ||||||||||||| ||||||| | |||||||||||||||| ||||    
T  45829130 tcaacagtttactgccgaggaaaaccttggtagttaactgcagccgatttc 45829180  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 38119644 - 38119607
Alignment:
Q  115 actgccgagaaaaacctcgatagttaactgcagccggt 152  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  38119644 actgccgaggaaaacctcggtagttaactgcagccggt 38119607  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 211
Target Start/End: Complemental strand, 49854468 - 49854439
Alignment:
Q  182 ggggtattttgatattttactcgtgtttct 211  Q
    ||||||||||||||||||||||||||||||    
T  49854468 ggggtattttgatattttactcgtgtttct 49854439  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 42572771 - 42572807
Alignment:
Q  119 ccgagaaaaacctcgatagttaactgcagccggtttc 155  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  42572771 ccgaggaaaacctcgacagttaactgcagccggtttc 42572807  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 6928736 - 6928833
Alignment:
Q  114 tactgccgagaaaaacctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgtgtttct 211  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||||||||||    
T  6928736 tactgccgagaaaaacctcggtagttaactgcagccggtttcgtgtttcctcgacagttaaccaccaaggggtattttggtattttactcgtgtttct 6928833  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 195
Target Start/End: Complemental strand, 30252632 - 30252548
Alignment:
Q  112 tttactgccgagaaaaacctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcga-ggggtattttgata 195  Q
    |||||||||||| ||| |||||  |||||||| |||||||||| || ||| ||||||||||||| | ||| | ||||||||||||    
T  30252632 tttactgccgaggaaatcctcggcagttaactacagccggttttgtatttcctcgacagttaactaccgatgaggtattttgata 30252548  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 51326023 - 51325957
Alignment:
Q  135 tagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttac 201  Q
    ||||||||||||||||||||  | ||| ||||||||||||| || ||||| |||||| || ||||||    
T  51326023 tagttaactgcagccggttttatttttcctcgacagttaactattgagggatattttcatcttttac 51325957  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 35555438 - 35555538
Alignment:
Q  111 gtttactgccgagaaaaacctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgtgtttc 210  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||| ||||| |||| |||||||| | |||||||||||||| |||||||||||||||||    
T  35555438 gtttagtgccgagaaaaacttcggtagttaactgcagccggtttcatgtttcctcggcagttaactaccgaggggtattttggtattttactcgtgtttc 35555537  T
Q  211 t 211  Q
    |    
T  35555538 t 35555538  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 35555179 - 35555278
Alignment:
Q  112 tttactgccgagaaaaacctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgtgtttct 211  Q
    |||| ||||||||||||| ||| |||||||||||| |||||||||||||| |||| |||||||| | |||||||||||||| ||||||||| ||||||||    
T  35555179 tttagtgccgagaaaaacttcggtagttaactgcaaccggtttcgtgtttcctcggcagttaactaccgaggggtattttggtattttacttgtgtttct 35555278  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 46439566 - 46439668
Alignment:
Q  109 ctgtttactgccgagaaaaacctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgtgtt 208  Q
    ||||||||||||||||||||||||| |||||||||||||  ||||| |||||| |||  |||||||| | ||| || ||||||| |||||||||||||||    
T  46439566 ctgtttactgccgagaaaaacctcggtagttaactgcagttggttttgtgtttcctctgcagttaactaccgatggatattttggtattttactcgtgtt 46439665  T
Q  209 tct 211  Q
    |||    
T  46439666 tct 46439668  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 72515 - 72611
Alignment:
Q  115 actgccgagaaaaacctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgtgtttct 211  Q
    |||| |||| ||||||||| ||||||||||||| ||||||| | ||| |||| |||||||| | |||  ||||||||| ||||||||||||||||||    
T  72515 actgtcgaggaaaacctcggtagttaactgcagacggtttcatatttcctcggcagttaactaccgaatggtattttggtattttactcgtgtttct 72611  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 41933647 - 41933728
Alignment:
Q  130 ctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgtgtttct 211  Q
    |||| ||||||||||||||||||||| | ||| |||| || ||||| ||||||||||||| |  | ||||||||||||||||    
T  41933647 ctcggtagttaactgcagccggtttcatttttcctcggcacttaactatcgaggggtattgtcgttttttactcgtgtttct 41933728  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 9013879 - 9013917
Alignment:
Q  115 actgccgagaaaaacctcgatagttaactgcagccggtt 153  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  9013879 actgccgaggaaaacctcgatagttaactgcagccggtt 9013917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 40334514 - 40334448
Alignment:
Q  135 tagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttac 201  Q
    ||||||||||||||||||||  | ||| |||||||||||||  |||| || || |||||||||||||    
T  40334514 tagttaactgcagccggttttatttttcctcgacagttaactgtcgatggatactttgatattttac 40334448  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 8111425 - 8111465
Alignment:
Q  115 actgccgagaaaaacctcgatagttaactgcagccggtttc 155  Q
    ||||||||| ||| ||||| |||||||||||||||||||||    
T  8111425 actgccgaggaaatcctcggtagttaactgcagccggtttc 8111465  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 30704081 - 30704041
Alignment:
Q  115 actgccgagaaaaacctcgatagttaactgcagccggtttc 155  Q
    ||||||||| ||||||| | |||||||||||||||||||||    
T  30704081 actgccgaggaaaaccttggtagttaactgcagccggtttc 30704041  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 19694287 - 19694204
Alignment:
Q  129 cctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcga-ggggtattttgatattttactcgtgtttct 211  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||| |  || ||||||||||| ||||||||| ||||||||    
T  19694287 cctcggtagttaactgcagccggttttgttttttctcgacagttaactacagagggggtattttggtattttactggtgtttct 19694204  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 31567989 - 31567908
Alignment:
Q  130 ctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgtgtttct 211  Q
    |||||||||||||||||| ||| ||  | |||||||||||||||||   |||||| ||||||| |||||||| |||||||||    
T  31567989 ctcgatagttaactgcagtcggatttattttttctcgacagttaactgccgagggatattttggtattttacacgtgtttct 31567908  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 40539124 - 40539201
Alignment:
Q  135 tagttaactgcagccggtttcgtgttttctcgacagttaaccatcgagggg-tattttgatattttactcgtgtttct 211  Q
    ||||||||||||| | ||||| | ||| |||| |||||||| ||||||||| ||||||| ||||||||||||||||||    
T  40539124 tagttaactgcagtcagtttcatatttcctcggcagttaactatcgaggggatattttggtattttactcgtgtttct 40539201  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 16327486 - 16327392
Alignment:
Q  111 gtttactgccgagaaaa----acctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttac 201  Q
    ||||||||||||| |||    |||||| |||||||||||||| |||||  | |||  ||| ||||||||||||||||| |||||| || ||||||    
T  16327486 gtttactgccgaggaaaacctacctcggtagttaactgcagcaggtttaatttttcatcggcagttaaccatcgagggatatttttatcttttac 16327392  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 6637597 - 6637557
Alignment:
Q  115 actgccgagaaaaacctcgatagttaactgcagccggtttc 155  Q
    |||||| || ||||||||| |||||||||||||||||||||    
T  6637597 actgccaaggaaaacctcggtagttaactgcagccggtttc 6637557  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 6638035 - 6638115
Alignment:
Q  129 cctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgtgttt 209  Q
    ||||| ||||||| ||||  || |||||| ||| || |||||||||| | ||| || ||||||| ||||||||||||||||    
T  6638035 cctcggtagttaattgcaatcgatttcgtatttccttgacagttaactaccgaaggatattttggtattttactcgtgttt 6638115  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 47669666 - 47669574
Alignment:
Q  120 cgagaaaaacctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcga-ggggtattttgatattttactcgtgtttct 211  Q
    |||| ||| ||||| ||||||||| |||||| |||||| ||| |||| |||||||| | ||| ||||||||||| ||||||||||||||||||    
T  47669666 cgaggaaatcctcggtagttaactacagccgatttcgtatttcctcggcagttaactaccgaaggggtattttggtattttactcgtgtttct 47669574  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 9491471 - 9491394
Alignment:
Q  115 actgccgagaaaaacctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcga-ggggtatttt 191  Q
    |||| |||| ||| ||||| ||||||||||||||||||||||| ||| |||| |||||||| | ||| ||||||||||    
T  9491471 actgtcgaggaaatcctcggtagttaactgcagccggtttcgtatttcctcggcagttaactaccgatggggtatttt 9491394  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 16674832 - 16674792
Alignment:
Q  115 actgccgagaaaaacctcgatagttaactgcagccggtttc 155  Q
    ||||||||| ||| ||||| |||||||||||||||||||||    
T  16674832 actgccgaggaaatcctcggtagttaactgcagccggtttc 16674792  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 17649200 - 17649160
Alignment:
Q  115 actgccgagaaaaacctcgatagttaactgcagccggtttc 155  Q
    ||||||||| ||| ||||| |||||||||||||||||||||    
T  17649200 actgccgaggaaatcctcggtagttaactgcagccggtttc 17649160  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 24085292 - 24085208
Alignment:
Q  115 actgccgagaaaaacctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgagggg-tattttgatattt 198  Q
    |||| |||| ||| ||||| ||||||||||||| ||||||||| ||| |||| |||||||| | ||||||| |||||||||||||    
T  24085292 actgtcgaggaaatcctcggtagttaactgcagtcggtttcgtatttcctcggcagttaactaacgaggggttattttgatattt 24085208  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 17596983 - 17596907
Alignment:
Q  136 agttaactgcagccggtttcgtgttttctcgacagttaaccatcga-ggggtattttgatattttactcgtgtttct 211  Q
    |||||||||||||||||||  | ||| |||||||||||||    || ||||||||||| ||||||||| ||||||||    
T  17596983 agttaactgcagccggttttatttttcctcgacagttaactgcagagggggtattttggtattttactggtgtttct 17596907  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 28362764 - 28362732
Alignment:
Q  115 actgccgagaaaaacctcgatagttaactgcag 147  Q
    ||||||||| |||||||||||||||||||||||    
T  28362764 actgccgaggaaaacctcgatagttaactgcag 28362732  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 27532641 - 27532723
Alignment:
Q  129 cctcgatagttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgtgtttct 211  Q
    ||||||||||||||||||| | ||||  | ||| |||| ||||||||  ||||||||||||||| ||||||||  ||||||||    
T  27532641 cctcgatagttaactgcagtcagttttatttttcctcggcagttaactgtcgaggggtattttggtattttacatgtgtttct 27532723  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 41065926 - 41065857
Alignment:
Q  136 agttaactgcagccggtttcgtgttttctcgacagttaaccatcgaggggtattttgatattttactcgt 205  Q
    |||||||||||| || |||||| ||| |||| |||||||| | ||||  |||||||||||||||||||||    
T  41065926 agttaactgcagtcgatttcgtatttcctcggcagttaactaccgagaagtattttgatattttactcgt 41065857  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 13665458 - 13665382
Alignment:
Q  136 agttaactgcagccggtttcgtgttttctcgacagttaaccatcgagggg-tattttgatattttactcgtgtttct 211  Q
    |||||||||||||||||||  | ||| |||| |||||||| |  |||||| ||||||||||||||||| ||||||||    
T  13665458 agttaactgcagccggttttatttttcctcggcagttaactacagagggggtattttgatattttactggtgtttct 13665382  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 36503136 - 36503102
Alignment:
Q  115 actgccgagaaaaacctcgatagttaactgcagcc 149  Q
    ||||||||||||||||||| |||||||||||||||    
T  36503136 actgccgagaaaaacctcggtagttaactgcagcc 36503102  T

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Target: scaffold0303 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 20299 - 20342
Alignment:
Q  48 tttattatttgattattattgtactaaccctttcattgagcaaa 91  Q
    |||||||||||||||||||||  ||| |||||||||||||||||    
T  20299 tttattatttgattattattgatctacccctttcattgagcaaa 20342  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 236293 - 236261
Alignment:
Q  115 actgccgagaaaaacctcgatagttaactgcag 147  Q
    ||||||||| |||||||||||||||||||||||    
T  236293 actgccgaggaaaacctcgatagttaactgcag 236261  T

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