View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165_low_21 (Length: 344)
Name: NF5165_low_21
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 9953021 - 9953346
Alignment:
| Q |
19 |
ggtaagtccttcatgtaccatgtctaagataaaaataactaatcaattttcagaagaagaaaaatatcatgaatgtgcactcttcaaagggttaaagaaa |
118 |
Q |
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| T |
9953021 |
ggtaagtccttcatgtaccatgtctaagataaaaataaataatcaattttcagaagaagaaaaatatcatgaatgtgcactcttcaaagggttaaagaaa |
9953120 |
T |
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| Q |
119 |
aagtacaattggtcatgaattcacctattgcaaaagggaaagatagttcaggtgtagattgaattgcttacctggatttgctagatctgaagttcacatt |
218 |
Q |
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| T |
9953121 |
aagtacaattggtcatgaattcacctattgcaaaagggaaagatagttcaggtgtagattgaattgcttacctggatttgctagatctgaagttcacatt |
9953220 |
T |
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| Q |
219 |
gatgtcaaaatcatataaccaaaaaatttcaatcatatttgtacatcatggtgaaacatactttcaatgttatttgtaccatagtgaaaaatgactcata |
318 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9953221 |
gatgtcaaaatcatataaccaaaatatttcaatcatatttgtacatcatggtgaaacatactttcaatgttatttgtaccatagtgaaaaatgactcata |
9953320 |
T |
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| Q |
319 |
ttgccctaaccctaataaatattctt |
344 |
Q |
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|||||||||||||||||||||||||| |
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| T |
9953321 |
ttgccctaaccctaataaatattctt |
9953346 |
T |
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