View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5165_low_25 (Length: 325)

Name: NF5165_low_25
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5165_low_25
NF5165_low_25
[»] chr3 (3 HSPs)
chr3 (215-310)||(26731337-26731432)
chr3 (257-310)||(47704201-47704254)
chr3 (87-129)||(1128034-1128076)
[»] chr7 (4 HSPs)
chr7 (61-172)||(36009379-36009489)
chr7 (257-310)||(12129101-12129154)
chr7 (87-129)||(38315982-38316024)
chr7 (87-129)||(41713163-41713205)
[»] scaffold0010 (1 HSPs)
scaffold0010 (257-310)||(255831-255884)
[»] chr4 (3 HSPs)
chr4 (257-310)||(23059807-23059860)
chr4 (87-129)||(32894508-32894550)
chr4 (87-129)||(49347021-49347063)
[»] chr8 (1 HSPs)
chr8 (260-310)||(26951906-26951956)
[»] chr5 (2 HSPs)
chr5 (260-310)||(30304464-30304514)
chr5 (87-129)||(41784820-41784862)
[»] chr2 (3 HSPs)
chr2 (257-310)||(28590418-28590471)
chr2 (87-131)||(17947742-17947786)
chr2 (76-158)||(19239184-19239266)
[»] chr1 (2 HSPs)
chr1 (257-302)||(10395833-10395878)
chr1 (87-129)||(51129571-51129613)
[»] chr6 (1 HSPs)
chr6 (87-129)||(1528759-1528801)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 215 - 310
Target Start/End: Complemental strand, 26731432 - 26731337
Alignment:
Q  215 tcatctttcgacataactaaattaataacaaaaggctttgctcagcccaaagaattagatcaagcagcagtaaccaacccataactccacaggttc 310  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26731432 tcatcattcgacataactaaattaataacaaaaggatttgctcagcccaaagaattagatcatgcagcagtaaccaacccataactccacaggttc 26731337  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 47704254 - 47704201
Alignment:
Q  257 cagcccaaagaattagatcaagcagcagtaaccaacccataactccacaggttc 310  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47704254 cagcccaaagaattagatcaagcagcagtaaccaaaccataactccacaggttc 47704201  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 1128076 - 1128034
Alignment:
Q  87 aagatgattctggtctaacatattgaatgaatttttgagatac 129  Q
    ||||||||| |||||||||| |||||||||||||| |||||||    
T  1128076 aagatgattttggtctaacacattgaatgaattttagagatac 1128034  T

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Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 61 - 172
Target Start/End: Complemental strand, 36009489 - 36009379
Alignment:
Q  61 tctaatctctcaatcttttttctctcaagatgattctggtctaacatattgaatgaatttttgagatactagagaatataatttagaaattcataaccat 160  Q
    |||||| ||||||| ||| |||| | |||||||||||| || |||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  36009489 tctaatgtctcaatttttcttctgtaaagatgattctg-tccaacacattgaaagaatttttgagatactagagaatataatgtagaaattcataaccat 36009391  T
Q  161 tttaatatcctt 172  Q
    |||||| |||||    
T  36009390 tttaatttcctt 36009379  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 12129101 - 12129154
Alignment:
Q  257 cagcccaaagaattagatcaagcagcagtaaccaacccataactccacaggttc 310  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12129101 cagcccaaagaattagatcaagcagtagtaaccaacccataactccacaggttc 12129154  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 38315982 - 38316024
Alignment:
Q  87 aagatgattctggtctaacatattgaatgaatttttgagatac 129  Q
    ||||||||| |||||||||| |||||||||||||| |||||||    
T  38315982 aagatgattttggtctaacacattgaatgaattttagagatac 38316024  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 41713163 - 41713205
Alignment:
Q  87 aagatgattctggtctaacatattgaatgaatttttgagatac 129  Q
    ||||||||| |||||||||| |||||||||||||| |||||||    
T  41713163 aagatgattttggtctaacacattgaatgaattttagagatac 41713205  T

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Target: scaffold0010 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 255884 - 255831
Alignment:
Q  257 cagcccaaagaattagatcaagcagcagtaaccaacccataactccacaggttc 310  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  255884 cagcccaaagaattagatcaagcagcagtaaccaaaccataactccacaggttc 255831  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 23059860 - 23059807
Alignment:
Q  257 cagcccaaagaattagatcaagcagcagtaaccaacccataactccacaggttc 310  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23059860 cagcccaaagaattagatcaagcagcagtaaccaaaccataactccacaggttc 23059807  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 32894550 - 32894508
Alignment:
Q  87 aagatgattctggtctaacatattgaatgaatttttgagatac 129  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  32894550 aagatgattttggtctaacacattgaatgaatttttgagatac 32894508  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 49347063 - 49347021
Alignment:
Q  87 aagatgattctggtctaacatattgaatgaatttttgagatac 129  Q
    ||||||||| |||||||||| |||||||||||||| |||||||    
T  49347063 aagatgattttggtctaacacattgaatgaattttagagatac 49347021  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 26951956 - 26951906
Alignment:
Q  260 cccaaagaattagatcaagcagcagtaaccaacccataactccacaggttc 310  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26951956 cccaaagaattagatcaagcagcagtaaccaaaccataactccacaggttc 26951906  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 30304464 - 30304514
Alignment:
Q  260 cccaaagaattagatcaagcagcagtaaccaacccataactccacaggttc 310  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30304464 cccaaagaattagatcaagcagcagtaaccaaaccataactccacaggttc 30304514  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 41784820 - 41784862
Alignment:
Q  87 aagatgattctggtctaacatattgaatgaatttttgagatac 129  Q
    ||||||||| |||||||||| |||||||||||||| |||||||    
T  41784820 aagatgattttggtctaacacattgaatgaattttagagatac 41784862  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 28590471 - 28590418
Alignment:
Q  257 cagcccaaagaattagatcaagcagcagtaaccaacccataactccacaggttc 310  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  28590471 cagcccaaagaattagatcaagcagcagtaaccaaactataactccacaggttc 28590418  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 17947786 - 17947742
Alignment:
Q  87 aagatgattctggtctaacatattgaatgaatttttgagatacta 131  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||    
T  17947786 aagatgattttggtctaacacattgaatgaattttagagatacta 17947742  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 19239266 - 19239184
Alignment:
Q  76 ttttttctctcaagatgattctggtctaacatattgaatgaatttttgagatactagagaatataatttagaaattcataacc 158  Q
    ||||| || |||||||||||||| | || ||  ||||||| |||||  | ||||||||||| |||||||||||| ||||||||    
T  19239266 tttttactatcaagatgattctgatttagcacgttgaatggattttaaaaatactagagaagataatttagaaaatcataacc 19239184  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 10395878 - 10395833
Alignment:
Q  257 cagcccaaagaattagatcaagcagcagtaaccaacccataactcc 302  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||||    
T  10395878 cagcccaaagaattagatccagcagcagtaatcaatccataactcc 10395833  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 51129571 - 51129613
Alignment:
Q  87 aagatgattctggtctaacatattgaatgaatttttgagatac 129  Q
    ||||||||| |||||||||| |||||||||||||| |||||||    
T  51129571 aagatgattttggtctaacacattgaatgaattttagagatac 51129613  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 1528759 - 1528801
Alignment:
Q  87 aagatgattctggtctaacatattgaatgaatttttgagatac 129  Q
    ||||||||| |||||||||| |||||||||||||| |||||||    
T  1528759 aagatgattttggtctaacacattgaatgaattttagagatac 1528801  T

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