View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165_low_32 (Length: 273)
Name: NF5165_low_32
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 5919320 - 5919079
Alignment:
| Q |
12 |
atcatcatacaacagatcaaaacctactagatttacaaacaagtttcaaaccagatagttatctcaagaagatctacttattaccatctccaatggtttt |
111 |
Q |
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| T |
5919320 |
atcatcatacaacagatcaaaacctactagatttacaaacaagtttcaaaccagatagttatctcaagaagatctacttattaccatctccaatggtttt |
5919221 |
T |
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| Q |
112 |
actatctacaacaattttaactttcctatactcaacatctaaaggctgcatagaacatccttctggaaccactgcaccacgtttattgccaaagattgtc |
211 |
Q |
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| T |
5919220 |
actatctacaacaattttaacttttctatactcaacatctaaaggttgcatagaacatccttctggaacaactgcaccacgtttattgccaaagattgtc |
5919121 |
T |
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| Q |
212 |
cacaaataaagcacagtgaatgctgtcaatgctccacaacca |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
5919120 |
cacaaataaagcacagtgaatgctgtcaatgctccacaacca |
5919079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 127 - 253
Target Start/End: Original strand, 3028331 - 3028457
Alignment:
| Q |
127 |
tttaactttcctatactcaacatctaaaggctgcatagaacatccttctggaaccactgcaccacgtttattgccaaagattgtccacaaataaagcaca |
226 |
Q |
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|||||||||||||| || ||||| |||| | ||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||| |
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| T |
3028331 |
tttaactttcctatgctaaacatgtaaaagttgcatagaacatccttctggaaccactgcacaacgtttattggcaaatattgtccacaaataaagcaca |
3028430 |
T |
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| Q |
227 |
gtgaatgctgtcaatgctccacaacca |
253 |
Q |
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| T |
3028431 |
ataaatgctgtcaatgctccacaacca |
3028457 |
T |
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