View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5165_low_35 (Length: 262)

Name: NF5165_low_35
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5165_low_35
NF5165_low_35
[»] chr3 (9 HSPs)
chr3 (16-262)||(32606392-32606643)
chr3 (175-262)||(49682176-49682263)
chr3 (213-262)||(3973860-3973909)
chr3 (213-262)||(3995968-3996017)
chr3 (177-262)||(21813166-21813251)
chr3 (213-262)||(4009496-4009545)
chr3 (174-244)||(39144976-39145046)
chr3 (179-243)||(31294383-31294447)
chr3 (213-261)||(46547791-46547839)
[»] chr4 (8 HSPs)
chr4 (178-262)||(38949069-38949153)
chr4 (207-262)||(34469577-34469632)
chr4 (178-262)||(39804896-39804981)
chr4 (175-262)||(32893020-32893107)
chr4 (178-262)||(38380470-38380554)
chr4 (132-244)||(31655473-31655581)
chr4 (215-261)||(7388824-7388870)
chr4 (216-261)||(19652683-19652728)
[»] chr8 (8 HSPs)
chr8 (177-262)||(33285935-33286020)
chr8 (129-262)||(20142449-20142578)
chr8 (206-262)||(14237168-14237224)
chr8 (175-262)||(23984263-23984350)
chr8 (180-262)||(14855594-14855676)
chr8 (222-262)||(11078116-11078156)
chr8 (175-262)||(43238151-43238238)
chr8 (213-261)||(6904215-6904263)
[»] chr7 (6 HSPs)
chr7 (129-262)||(6771804-6771933)
chr7 (129-262)||(44319865-44319994)
chr7 (129-262)||(6775198-6775327)
chr7 (129-168)||(15034898-15034937)
chr7 (234-262)||(13040304-13040332)
chr7 (124-168)||(20397579-20397623)
[»] chr1 (12 HSPs)
chr1 (129-262)||(14758526-14758655)
chr1 (175-262)||(30529363-30529450)
chr1 (129-262)||(13792007-13792136)
chr1 (178-262)||(41649898-41649982)
chr1 (194-262)||(46729199-46729268)
chr1 (130-262)||(44920186-44920314)
chr1 (133-262)||(35508361-35508487)
chr1 (206-262)||(36564503-36564559)
chr1 (179-261)||(46895945-46896027)
chr1 (179-240)||(14890517-14890578)
chr1 (213-253)||(18038940-18038980)
chr1 (213-261)||(34582701-34582749)
[»] chr5 (6 HSPs)
chr5 (124-262)||(248471-248606)
chr5 (206-262)||(20125664-20125720)
chr5 (206-262)||(16980778-16980834)
chr5 (131-262)||(42877213-42877340)
chr5 (216-261)||(18988803-18988848)
chr5 (213-261)||(40944278-40944326)
[»] chr2 (6 HSPs)
chr2 (178-262)||(32438092-32438176)
chr2 (205-262)||(7933333-7933390)
chr2 (177-262)||(18734363-18734448)
chr2 (178-262)||(33962953-33963037)
chr2 (176-222)||(29673763-29673809)
chr2 (124-162)||(18684322-18684360)
[»] scaffold0633 (1 HSPs)
scaffold0633 (178-262)||(5014-5098)
[»] scaffold0027 (1 HSPs)
scaffold0027 (177-260)||(122477-122560)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 32606643 - 32606392
Alignment:
Q  16 atacacgaattgattattaaagaatattttgaaaagaagaagatttagagagacttattattgacatgcaagttactaaattgattgattacaataatgt 115  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32606643 atacactaattgat-attaaagaatattttgaaaagaagaagatttagagagacttattattgacatgcaagttactaaattgattgattacaataatgt 32606545  T
Q  116 atcaacactttttagggtcttgttaacgagtgctcttaggacac----------tctataaggttttaatttcaattaaaaaattatattttgaaaaaag 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||          |||||||||||    |||||||||||||||||||||||||||||||    
T  32606544 atcaacactttttagggtcttgttaacgagtgctcttaggacactctaggacactctataaggtt----tttcaattaaaaaattatattttgaaaaaag 32606449  T
Q  206 ttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||    
T  32606448 ttaacatttcaatttccgatgcattgaatgcataatttttcataaaaatttattatt 32606392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 49682176 - 49682263
Alignment:
Q  175 tttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    ||||||||||||||||||   || |||||  ||||||||||||||||||| ||| |||||||||||||||  ||||||||||||||||    
T  49682176 tttcaattaaaaaattattccttaaaaaagtttaacatttcaatttccgaagcattgaatgcacaattttctataaaaatttactatt 49682263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 3973860 - 3973909
Alignment:
Q  213 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||||||||||||| | ||||||||||||| |||||||||||||||||    
T  3973860 ttcaatttccgatgcattaaatgcacaattttccataaaaatttactatt 3973909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 3996017 - 3995968
Alignment:
Q  213 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||||||||||||| | ||||||||||||| |||||||||||||||||    
T  3996017 ttcaatttccgatgcattaaatgcacaattttccataaaaatttactatt 3995968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 21813251 - 21813166
Alignment:
Q  177 tcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||||| |||||||   ||||||||  |||||| || || |||||||||| |||||||| |||||| |||||||||||||||||    
T  21813251 tcaattaagaaattattcattgaaaaagtttaacactttaaattccgatgcattgaatgcataattttccataaaaatttactatt 21813166  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 4009545 - 4009496
Alignment:
Q  213 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||||||||||||| | ||||||||||||| || ||||||||||||||    
T  4009545 ttcaatttccgatgcattaaatgcacaattttccacaaaaatttactatt 4009496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 39144976 - 39145046
Alignment:
Q  174 atttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttt 244  Q
    |||| |||||| ||||| | |||| |||||  |||||| |||||||||||||||| |||||||| ||||||    
T  39144976 attttaattaagaaattgttttttaaaaaattttaacacttcaatttccgatgcattgaatgcataatttt 39145046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 31294383 - 31294447
Alignment:
Q  179 aattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaattt 243  Q
    |||||| |||||||  |||||||||  |||||| || ||||||||||||| ||||||||| ||||    
T  31294383 aattaagaaattattctttgaaaaagtttaacactttaatttccgatgcattgaatgcaccattt 31294447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 46547839 - 46547791
Alignment:
Q  213 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactat 261  Q
    |||||||||| ||||| ||||| || ||||||||||||||| |||||||    
T  46547839 ttcaatttccaatgcattgaatacataatttttcataaaaaattactat 46547791  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 38949153 - 38949069
Alignment:
Q  178 caattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    ||||||||||||||| | || |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38949153 caattaaaaaattatttcttaaaaaaatttaacacttcaatttccgatgcattgaatgcacaatttttcataaaaatttactatt 38949069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 34469632 - 34469577
Alignment:
Q  207 taacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||| ||||    
T  34469632 taacatttcaatttccgatgcattaaatgcacaatttttcataaaaatttattatt 34469577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 39804981 - 39804896
Alignment:
Q  178 caattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcata-aaaatttactatt 262  Q
    |||||||||||||||  |||||||||| |||||| ||||||||  ||| || | |||||||||||||||||| |||||||||||||    
T  39804981 caattaaaaaattattatttgaaaaaatttaacacttcaatttttgatacattaaatgcacaatttttcataaaaaatttactatt 39804896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 32893020 - 32893107
Alignment:
Q  175 tttcaattaaaaaattatattttgaaaaaagtt-aacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||||||| || |||| |||| ||||||||| ||||||||||||| ||||||| |||||||||||||||  |||||| |||||||||    
T  32893020 tttcaattaagaatttat-ttttaaaaaaagtttaacatttcaattttcgatgcattgaatgcacaattttctataaaagtttactatt 32893107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 38380470 - 38380554
Alignment:
Q  178 caattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    ||||||| ||||| |  |||||||||  |||||| |||||||||||| ||| | |||||| |||||| |||||||||||||||||    
T  38380470 caattaataaatttttctttgaaaaagtttaacacttcaatttccgaagcattaaatgcataattttccataaaaatttactatt 38380554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 244
Target Start/End: Original strand, 31655473 - 31655581
Alignment:
Q  132 gtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactg 231  Q
    ||||||||||||||||| |||||| |||| | ||||||||      |||||||||||||||  ||| |||||  |||||| |||||| ||||||| | ||    
T  31655473 gtcttgttaacgagtgcccttagggcactttttaaggtttcc----caattaaaaaattattctttaaaaaagtttaacacttcaatatccgatgtattg 31655568  T
Q  232 aatgcacaatttt 244  Q
    |||||||||||||    
T  31655569 aatgcacaatttt 31655581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 7388824 - 7388870
Alignment:
Q  215 caatttccgatgcactgaatgcacaatttttcataaaaatttactat 261  Q
    |||||||||||||| | ||||||||| ||| ||||||||||||||||    
T  7388824 caatttccgatgcattaaatgcacaagtttccataaaaatttactat 7388870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 19652683 - 19652728
Alignment:
Q  216 aatttccgatgcactgaatgcacaatttttcataaaaatttactat 261  Q
    ||||||| ||||| ||||||||||| |||||||||||| |||||||    
T  19652683 aatttccaatgcattgaatgcacaaattttcataaaaacttactat 19652728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 33286020 - 33285935
Alignment:
Q  177 tcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||| ||||| | | ||| |||||||||||||||||||||||||||    
T  33286020 tcaattaagaaattattttttgaaaaaatttaacatttcaattttcgatgtattaaatacacaatttttcataaaaatttactatt 33285935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 262
Target Start/End: Complemental strand, 20142578 - 20142449
Alignment:
Q  129 agggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgca 228  Q
    |||||||||||||||||||  || |||||||||| ||||||    ||||||||||| ||||||| |||| |||||  |||||| || ||||| |||||||    
T  20142578 agggtcttgttaacgagtgtcctaaggacactctttaaggt----atttcaattaagaaattatttttttaaaaagtttaacactttaattttcgatgca 20142483  T
Q  229 ctgaatgcacaatttttcataaaaatttactatt 262  Q
     | ||||||||||||  |||||||||||| ||||    
T  20142482 ttaaatgcacaatttcccataaaaatttattatt 20142449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 14237168 - 14237224
Alignment:
Q  206 ttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||| |||||||||||||||| | ||||||||||||| |||||||||||||||||    
T  14237168 ttaacacttcaatttccgatgcattaaatgcacaattttccataaaaatttactatt 14237224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 23984263 - 23984350
Alignment:
Q  175 tttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||||||| |||||||  ||| |||||  ||||||  |||||||  ||| ||||||| ||||||||||||||||||||||||||||    
T  23984263 tttcaattaagaaattattctttaaaaaagtttaacacctcaatttttgatacactgaaagcacaatttttcataaaaatttactatt 23984350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 14855676 - 14855594
Alignment:
Q  180 attaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||||||||||  |||||||||  |||||| |||||||| |||||||   |||| ||| ||||||||||||||||| ||||    
T  14855676 attaaaaaattattctttgaaaaagtttaacacttcaatttacgatgcatcaaatggacactttttcataaaaatttattatt 14855594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 11078116 - 11078156
Alignment:
Q  222 cgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  11078116 cgatgcattgaatgcataatttttcataaaaatttactatt 11078156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 262
Target Start/End: Complemental strand, 43238238 - 43238151
Alignment:
Q  175 tttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||||||| |||||||   || |||||  |||||| |||||||| ||||||| | |||| | |||||| |||||||||||||||||    
T  43238238 tttcaattaagaaattattccttaaaaaagtttaacacttcaattttcgatgcattaaatgtagaattttccataaaaatttactatt 43238151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 6904215 - 6904263
Alignment:
Q  213 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactat 261  Q
    |||||||||||||||| |||| |||||| ||| |||||||| |||||||    
T  6904215 ttcaatttccgatgcattgaacgcacaagtttccataaaaaattactat 6904263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 262
Target Start/End: Original strand, 6771804 - 6771933
Alignment:
Q  129 agggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgca 228  Q
    |||||||| ||||||||||  |||| |||||||| ||||||||     |||||||| |||||||  |||||||||| | | ||||||||||||||||  |    
T  6771804 agggtcttcttaacgagtgtccttaagacactctttaaggtttc----tcaattaagaaattattctttgaaaaaactcaccatttcaatttccgatata 6771899  T
Q  229 ctgaatgcacaatttttcataaaaatttactatt 262  Q
     ||||||||||||||| |||||||||||||||||    
T  6771900 ttgaatgcacaattttccataaaaatttactatt 6771933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 262
Target Start/End: Complemental strand, 44319994 - 44319865
Alignment:
Q  129 agggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgca 228  Q
    |||||||||||||||||||  || |||||||||| ||||||    ||||||||||| ||||||| |||| |||||  |||||| || ||||| |||||||    
T  44319994 agggtcttgttaacgagtgtcctaaggacactctttaaggt----atttcaattaagaaattatttttttaaaaagtttaacactttaattttcgatgca 44319899  T
Q  229 ctgaatgcacaatttttcataaaaatttactatt 262  Q
     | ||||||||||||  |||||||||||| ||||    
T  44319898 ttaaatgcacaatttcccataaaaatttattatt 44319865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 262
Target Start/End: Original strand, 6775198 - 6775327
Alignment:
Q  129 agggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgca 228  Q
    ||||||||||||| |||||  |||||| |||||| ||||||||     |||||||| |||||||  |||||||||  | |  |||| |||||||||||||    
T  6775198 agggtcttgttaaggagtgtccttagggcactctttaaggtttc----tcaattaataaattattctttgaaaaatctcactatttgaatttccgatgca 6775293  T
Q  229 ctgaatgcacaatttttcataaaaatttactatt 262  Q
     ||||||||||||||| |||||| ||||||||||    
T  6775294 ttgaatgcacaattttccataaatatttactatt 6775327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 15034937 - 15034898
Alignment:
Q  129 agggtcttgttaacgagtgctcttaggacactctataagg 168  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  15034937 agggtcttgttaacgagtgcccttaggacactctttaagg 15034898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 13040332 - 13040304
Alignment:
Q  234 tgcacaatttttcataaaaatttactatt 262  Q
    |||||||||||||||||||||||||||||    
T  13040332 tgcacaatttttcataaaaatttactatt 13040304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 20397623 - 20397579
Alignment:
Q  124 tttttagggtcttgttaacgagtgctcttaggacactctataagg 168  Q
    |||| ||||| |||||||||||||||||||||| ||||| |||||    
T  20397623 ttttaagggttttgttaacgagtgctcttaggatactctttaagg 20397579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 262
Target Start/End: Original strand, 14758526 - 14758655
Alignment:
Q  129 agggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgca 228  Q
    |||||||||||||||||||  || ||| |||||| ||| |||||     ||||||| |||||||   || |||||  ||||||||||||||| |||||||    
T  14758526 agggtcttgttaacgagtgtcctaagggcactctttaaagttttc----caattaagaaattattccttaaaaaagtttaacatttcaattttcgatgca 14758621  T
Q  229 ctgaatgcacaatttttcataaaaatttactatt 262  Q
     |||||||||||||||||||||||||||||||||    
T  14758622 ttgaatgcacaatttttcataaaaatttactatt 14758655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 30529363 - 30529450
Alignment:
Q  175 tttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||||||| |||||||  |||||||||| |||||| ||||||||| |||||| | ||||||||||||| |||||||||||||||||    
T  30529363 tttcaattaagaaattattctttgaaaaaatttaacacttcaatttctgatgcattaaatgcacaattttccataaaaatttactatt 30529450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 262
Target Start/End: Complemental strand, 13792136 - 13792007
Alignment:
Q  129 agggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgca 228  Q
    ||||||||| |||||||||  |||| |||||||| |||||||||    | |||||||||||||| |||| |||||  |||||| |||||||   ||||||    
T  13792136 agggtcttgctaacgagtgtccttaagacactctttaaggtttt----ttaattaaaaaattatttttttaaaaagtttaacacttcaattattgatgca 13792041  T
Q  229 ctgaatgcacaatttttcataaaaatttactatt 262  Q
     | |||||||||||| | ||||||||||||||||    
T  13792040 tttaatgcacaatttcttataaaaatttactatt 13792007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 41649898 - 41649982
Alignment:
Q  178 caattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||||||||||||   || |||||  ||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||||    
T  41649898 caattaaaaaattattccttaaaaaagtttaacatttcaatttcccatgcattgaatgcataattttccataaaaatttactatt 41649982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 46729199 - 46729268
Alignment:
Q  194 ttttgaaaaaag-ttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||| ||||||| |||||| ||||| |||||||||| ||||||||||||||| |||||||||||||||||    
T  46729199 tttttaaaaaagattaacacttcaaattccgatgcattgaatgcacaattttccataaaaatttactatt 46729268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 44920186 - 44920314
Alignment:
Q  130 gggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcac 229  Q
    |||||||||||||||||| | | ||| || ||| ||||||||     |||||||| |||||||   || |||||  |||||| ||||||||  ||||||     
T  44920186 gggtcttgttaacgagtgttttaagggcattctttaaggtttc----tcaattaagaaattattcattaaaaaagtttaacacttcaatttatgatgcat 44920281  T
Q  230 tgaatgcacaatttttcataaaaatttactatt 262  Q
    ||||||||||||||| |||||||||||||||||    
T  44920282 tgaatgcacaattttccataaaaatttactatt 44920314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 35508361 - 35508487
Alignment:
Q  133 tcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactga 232  Q
    |||||||||||||||| || | |||||||| || |||||     |||||||| |||||||  |||||||||| |||||| |||||||||| ||||| | |    
T  35508361 tcttgttaacgagtgccctgatgacactctttatggtttc----tcaattaagaaattattctttgaaaaaatttaacacttcaatttccaatgcattta 35508456  T
Q  233 a-tgcacaatttttcataaaaatttactatt 262  Q
    | || ||||||| ||||||||||||| ||||    
T  35508457 aatgtacaatttctcataaaaatttattatt 35508487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 36564559 - 36564503
Alignment:
Q  206 ttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||| |||||||||  | ||| ||||||||||||||||||||||| |||||||||    
T  36564559 ttaacacttcaatttctaaagcattgaatgcacaatttttcataaaattttactatt 36564503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 46895945 - 46896027
Alignment:
Q  179 aattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactat 261  Q
    |||||| ||||||| | ||||||||   ||| |||||||||||||||||| |||||||| || |||  ||||||| |||||||    
T  46895945 aattaagaaattatttattgaaaaagtctaatatttcaatttccgatgcattgaatgcataaatttctataaaaacttactat 46896027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 14890578 - 14890517
Alignment:
Q  179 aattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaa 240  Q
    ||||||||||||||   ||||||||| |||| | ||||||||||||| || |||||||||||    
T  14890578 aattaaaaaattattaattgaaaaaacttaatacttcaatttccgatacattgaatgcacaa 14890517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 18038940 - 18038980
Alignment:
Q  213 ttcaatttccgatgcactgaatgcacaatttttcataaaaa 253  Q
    |||||||||||||||| ||||| ||||| ||||||||||||    
T  18038940 ttcaatttccgatgcattgaatacacaaattttcataaaaa 18038980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 34582701 - 34582749
Alignment:
Q  213 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactat 261  Q
    ||||||||| |||||| |||||||| || |||||||||||| |||||||    
T  34582701 ttcaatttctgatgcattgaatgcataagttttcataaaaacttactat 34582749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 124 - 262
Target Start/End: Complemental strand, 248606 - 248471
Alignment:
Q  124 tttttagggtcttgttaacgagtgctctta-ggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagtt-aacatttcaatttc 221  Q
    |||| ||||||||||||||||||| ||||| || |||||| ||||||||     |||||||| ||||||| | || ||||||||| |||| |||||||||    
T  248606 ttttaagggtcttgttaacgagtg-tcttaagggcactctttaaggtttc----tcaattaagaaattatttctttaaaaaagtttaacacttcaatttc 248512  T
Q  222 cgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    ||||| | ||||||||||||||| |||||||||||||||||    
T  248511 cgatgtattgaatgcacaattttccataaaaatttactatt 248471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 262
Target Start/End: Complemental strand, 20125720 - 20125664
Alignment:
Q  206 ttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  20125720 ttaacacttcaattttcgatgcactaaatgcacaatttttcataaaaatttactatt 20125664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 16980778 - 16980834
Alignment:
Q  206 ttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||| ||||||||||||| || |||||| | |||||||||||||||| |||||||    
T  16980778 ttaacacttcaatttccgatacattgaatgtataatttttcataaaaatgtactatt 16980834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 262
Target Start/End: Original strand, 42877213 - 42877340
Alignment:
Q  131 ggtcttgttaacgagtgctcttaggacactctataaggttttaatttcaattaaaaaattatattttgaaaaaagtt-aacatttcaatttccgatgcac 229  Q
    ||||||| ||||||||| ||| |||||||||| ||| ||||     |||||| | ||||||| |  ||||||||||| || |||||||||| | ||| |     
T  42877213 ggtcttgctaacgagtgttctaaggacactctttaaagtttc----tcaattgagaaattat-tcatgaaaaaagtttaaaatttcaattttcaatgtat 42877307  T
Q  230 tgaatgcacaatttttcataaaaatttactatt 262  Q
    ||||| ||||||||| |||||||||||||||||    
T  42877308 tgaatacacaattttccataaaaatttactatt 42877340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 18988803 - 18988848
Alignment:
Q  216 aatttccgatgcactgaatgcacaatttttcataaaaatttactat 261  Q
    ||||||| ||||| |||||||| || ||||||||||||||||||||    
T  18988803 aatttccaatgcattgaatgcataagttttcataaaaatttactat 18988848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 40944326 - 40944278
Alignment:
Q  213 ttcaatttccgatgcactgaatgcacaatttttcataaaaatttactat 261  Q
    |||||||| ||||||| |||||| |||| ||| ||||||||||||||||    
T  40944326 ttcaattttcgatgcattgaatgtacaaatttccataaaaatttactat 40944278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 32438176 - 32438092
Alignment:
Q  178 caattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||||||||||||  ||||||||   |||||| |||||||||||||||| | ||||||||||||| |||||||||||||||||    
T  32438176 caattaaaaaattattatttgaaaaggtttaacacttcaatttccgatgcattaaatgcacaattttccataaaaatttactatt 32438092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 7933333 - 7933390
Alignment:
Q  205 gttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    ||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  7933333 gttaacacttcaatttccgatgcattgaatgcataatttttcataaaaatttactatt 7933390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 18734363 - 18734448
Alignment:
Q  177 tcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||||| |||||||   || |||||  |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||    
T  18734363 tcaattaagaaattattccttaaaaaagtttaacacttcaatttccgatacattgaatgcacaatttttcataaaaatttactatt 18734448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 33963037 - 33962953
Alignment:
Q  178 caattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    ||||||| |||||||  ||| |||||  |||||| |||||||| | ||||| |||||||||||||||||||||||||||| ||||    
T  33963037 caattaagaaattattctttaaaaaagtttaacacttcaattttcaatgcattgaatgcacaatttttcataaaaatttattatt 33962953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 29673763 - 29673809
Alignment:
Q  176 ttcaattaaaaaattatattttgaaaaaagttaacatttcaatttcc 222  Q
    ||||||||||||||||| ||||||||||| |||| ||||||||||||    
T  29673763 ttcaattaaaaaattattttttgaaaaaacttaatatttcaatttcc 29673809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 18684322 - 18684360
Alignment:
Q  124 tttttagggtcttgttaacgagtgctcttaggacactct 162  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  18684322 tttttagggtcttgttaacgagtgctctcgggacactct 18684360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 5098 - 5014
Alignment:
Q  178 caattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttactatt 262  Q
    |||||||||||||||   || |||||  ||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||||    
T  5098 caattaaaaaattattccttaaaaaagtttaacatttcaatttcccatgcattgaatgcataattttccataaaaatttactatt 5014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 122560 - 122477
Alignment:
Q  177 tcaattaaaaaattatattttgaaaaaagttaacatttcaatttccgatgcactgaatgcacaatttttcataaaaatttacta 260  Q
    |||||||| |||||||  |||||||||  |||||| || ||||||||||||| | ||||||||||||| |||||||| ||||||    
T  122560 tcaattaagaaattattctttgaaaaagtttaacactttaatttccgatgcattaaatgcacaattttccataaaaaattacta 122477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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