View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5165_low_4 (Length: 549)

Name: NF5165_low_4
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5165_low_4
NF5165_low_4
[»] chr6 (11 HSPs)
chr6 (65-532)||(10578656-10579129)
chr6 (360-532)||(6596094-6596266)
chr6 (197-314)||(6424085-6424202)
chr6 (198-262)||(19633344-19633408)
chr6 (193-260)||(7993298-7993365)
chr6 (204-262)||(6602488-6602546)
chr6 (379-422)||(6423989-6424032)
chr6 (491-526)||(6395568-6395603)
chr6 (493-532)||(6423930-6423969)
chr6 (205-263)||(6433085-6433143)
chr6 (216-262)||(6437149-6437195)
[»] chr5 (2 HSPs)
chr5 (201-325)||(20477197-20477321)
chr5 (201-263)||(17205955-17206017)
[»] chr7 (3 HSPs)
chr7 (198-256)||(15091350-15091408)
chr7 (198-263)||(10168807-10168872)
chr7 (198-263)||(10176332-10176397)
[»] chr8 (1 HSPs)
chr8 (198-259)||(32152209-32152270)
[»] chr1 (2 HSPs)
chr1 (198-252)||(19467185-19467239)
chr1 (198-263)||(33161432-33161497)
[»] chr4 (5 HSPs)
chr4 (198-251)||(1524075-1524128)
chr4 (216-259)||(1547469-1547512)
chr4 (204-259)||(6007668-6007723)
chr4 (216-259)||(12126883-12126926)
chr4 (214-259)||(2367687-2367732)


Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 65 - 532
Target Start/End: Original strand, 10578656 - 10579129
Alignment:
Q  65 gaaacgctttctcata---tcttcttctatttgcgg----agctctcaccatgaaaaggaagaaaatggttgagaatttacctgatgactgttgggaata 157  Q
    ||||||||||||||||   |||||||||||||||||     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10578656 gaaacgctttctcatatcttcttcttctatttgcggcgctcgctctcaccatgaaaagaaagaaaatggttgagaatttacctgatgactgttgggaata 10578755  T
Q  158 tattttgaaattcttggttaaggaaaacggtggttactatttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattc 257  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10578756 tattttgaaatacttcgttaaggaaaacggtggttactatttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattc 10578855  T
Q  258 tcactcgaggtctatccctcaagagtccctttcctcaaacacctactcaaaaggttccccaacctcacttccattacgcttaactactgcgtcggcattt 357  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10578856 tcactcgacgtctatccctcaagagtccctttcctcaaatacctactcaaaaggttccccaacctcacttccattacgcttaactactgcgtcggcgttt 10578955  T
Q  358 cttgtgacattgacaacatttttcgcttaatctctagtttcccgttgaagaaactcacatcgctcgttctctccggtgaacctaagttcccgtttgagaa 457  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10578956 cttgtgacgttgacaacatttttcgcttaatcactagttt-ccgttgaagaaactcacatcgctcgttctctccggtgaacctaagttcccgtttgagaa 10579054  T
Q  458 actcaactcgctagcactctccggcgaaagcatctttcccacagatgggttgcaagctttctcccaaaacataac 532  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  10579055 actcaactcgctagctctctccggcgaaagcatctttcccacagatgggttacgagctttctcccaaaacataac 10579129  T

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Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 360 - 532
Target Start/End: Original strand, 6596094 - 6596266
Alignment:
Q  360 tgtgacattgacaacatttttcgcttaatctctagtttcccgttgaagaaactcacatcgctcgttctctccggtgaacctaagttcccgtttgagaaac 459  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||  |||||| || |||| |||||||  ||||| ||| ||||||    
T  6596094 tgtgacgtcgacaacatttttcgcttaatctctagtttcccgttgaagaaactcacatttctcgttttcaccggcgaacctagattcccatttaagaaac 6596193  T
Q  460 tcaactcgctagcactctccggcgaaagcatctttcccacagatgggttgcaagctttctcccaaaacataac 532  Q
    | || ||||| |  |||||||||||||||||||||||| | || ||||||| || ||||||||||||||||||    
T  6596194 ttaaatcgctcgttctctccggcgaaagcatctttcccgctgacgggttgcgagttttctcccaaaacataac 6596266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 6424202 - 6424085
Alignment:
Q  197 tttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactcgaggtctatccctcaagagtccctttcctcaaa 296  Q
    |||||||||||| || |||||||||||||| ||||||||| ||||||||  ||||||||||||||||  ||||||   ||||| | ||||||||||||||    
T  6424202 tttgaattctctttccctcgtctccaaacagttcctctccgtaaccaactctctcctattctcactcacggtctacagctcaacactccctttcctcaaa 6424103  T
Q  297 cacctactcaaaaggttc 314  Q
    | ||||||||||||||||    
T  6424102 cgcctactcaaaaggttc 6424085  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 19633408 - 19633344
Alignment:
Q  198 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcact 262  Q
    |||||||||||||| |||||||||||||| |||||||| ||||||||  ||||||||||||||||    
T  19633408 ttgaattctctatccctcgtctccaaacagttcctctcaataaccaattgtctcctattctcact 19633344  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 7993298 - 7993365
Alignment:
Q  193 actatttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctca 260  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||| |||| | |||||| |||||||    
T  7993298 actacttgaattctttatctctcgtctccaaacagttcctctccatcaccagccgtctccgattctca 7993365  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 6602488 - 6602546
Alignment:
Q  204 tctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcact 262  Q
    |||||||| |||||||||||||| ||||||||| | |||||| ||||||||||||||||    
T  6602488 tctctatccctcgtctccaaacatttcctctccgtcaccaactgtctcctattctcact 6602546  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 422
Target Start/End: Complemental strand, 6424032 - 6423989
Alignment:
Q  379 ttcgcttaatctctagtttcccgttgaagaaactcacatcgctc 422  Q
    |||||||||||||||||||||| |||||||||||||| ||||||    
T  6424032 ttcgcttaatctctagtttcccattgaagaaactcacgtcgctc 6423989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 526
Target Start/End: Complemental strand, 6395603 - 6395568
Alignment:
Q  491 ctttcccacagatgggttgcaagctttctcccaaaa 526  Q
    ||||||||||||||||||||||||| ||||||||||    
T  6395603 ctttcccacagatgggttgcaagctctctcccaaaa 6395568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 532
Target Start/End: Complemental strand, 6423969 - 6423930
Alignment:
Q  493 ttcccacagatgggttgcaagctttctcccaaaacataac 532  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  6423969 ttcccacaaatgggttgcgagctttctcccaaaacataac 6423930  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 6433143 - 6433085
Alignment:
Q  205 ctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 263  Q
    ||||||| |||||||||||| | ||||||||| | ||||||  ||||||||||||||||    
T  6433143 ctctatccctcgtctccaaatagttcctctccgtcaccaaccatctcctattctcactc 6433085  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 6437195 - 6437149
Alignment:
Q  216 gtctccaaacaattcctctccataaccaacagtctcctattctcact 262  Q
    ||||||||||| ||||||||||| |||||| ||||||| ||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtctcctgttctcact 6437149  T

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Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 201 - 325
Target Start/End: Original strand, 20477197 - 20477321
Alignment:
Q  201 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactcgaggtctatccctcaagagtccctttcctcaaacacc 300  Q
    ||||||||||| | |||||||||||| |||||||| ||||| ||   ||||||||||||||||   ||| ||||||||| |||||||||| |||||  ||    
T  20477197 aattctctatcccgcgtctccaaacagttcctctctataacaaattctctcctattctcactcactgtcaatccctcaacagtccctttcgtcaaaggcc 20477296  T
Q  301 tactcaaaaggttccccaacctcac 325  Q
    ||||| |||||||| ||||||||||    
T  20477297 tactccaaaggttcaccaacctcac 20477321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 17206017 - 17205955
Alignment:
Q  201 aattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 263  Q
    ||||||||||| |||||||||||||| || ||||| || ||| ||||| ||| ||||||||||    
T  17206017 aattctctatccctcgtctccaaacagttactctctatcaccgacagtttccgattctcactc 17205955  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 15091350 - 15091408
Alignment:
Q  198 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctatt 256  Q
    ||||||||||| || |||||||||||||| ||||||||||| ||||||||||| |||||    
T  15091350 ttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctatt 15091408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 10168807 - 10168872
Alignment:
Q  198 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 263  Q
    |||||||||||||| || ||||||||||| ||||||||||| ||||||| ||| | ||| ||||||    
T  10168807 ttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcactc 10168872  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 10176332 - 10176397
Alignment:
Q  198 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 263  Q
    |||||||||||||| || ||||||||||| ||||||||||| ||||||| ||| | ||| ||||||    
T  10176332 ttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgattatcactc 10176397  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 32152270 - 32152209
Alignment:
Q  198 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctc 259  Q
    |||||||| || || |||||||||||||| ||||||||||| ||||||||||||| ||||||    
T  32152270 ttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgattctc 32152209  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 19467185 - 19467239
Alignment:
Q  198 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcc 252  Q
    ||||||||||| || || |||||||||||||||||||| ||||||||| ||||||    
T  19467185 ttgaattctctttcccttgtctccaaacaattcctctcaataaccaaccgtctcc 19467239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 33161497 - 33161432
Alignment:
Q  198 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctcactc 263  Q
    |||||||||||||| |||||||||||||| || |||||||| || || ||||| | ||||||||||    
T  33161497 ttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattctcactc 33161432  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 1524075 - 1524128
Alignment:
Q  198 ttgaattctctatctctcgtctccaaacaattcctctccataaccaacagtctc 251  Q
    ||||||||||| ||| | ||||| ||||||||||||||||| ||||||||||||    
T  1524075 ttgaattctctctctttggtctctaaacaattcctctccattaccaacagtctc 1524128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 1547469 - 1547512
Alignment:
Q  216 gtctccaaacaattcctctccataaccaacagtctcctattctc 259  Q
    ||||||||||||||||||||||| |||||| |||||| ||||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctc 1547512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 6007723 - 6007668
Alignment:
Q  204 tctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctc 259  Q
    ||||| || |||||||| ||||| ||||||||||| ||||||||||||| ||||||    
T  6007723 tctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 6007668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 12126926 - 12126883
Alignment:
Q  216 gtctccaaacaattcctctccataaccaacagtctcctattctc 259  Q
    |||||||||||||| |||||||| |||||| |||||||||||||    
T  12126926 gtctccaaacaatttctctccatcaccaaccgtctcctattctc 12126883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 2367687 - 2367732
Alignment:
Q  214 tcgtctccaaacaattcctctccataaccaacagtctcctattctc 259  Q
    |||||||||||||||| |||||||| |||||| |||||| ||||||    
T  2367687 tcgtctccaaacaatttctctccatcaccaaccgtctccgattctc 2367732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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