View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5165_low_41 (Length: 251)

Name: NF5165_low_41
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5165_low_41
NF5165_low_41
[»] chr4 (6 HSPs)
chr4 (1-217)||(12473883-12474099)
chr4 (1-217)||(12528292-12528508)
chr4 (153-208)||(12464088-12464143)
chr4 (5-108)||(12464174-12464276)
chr4 (215-246)||(12473669-12473700)
chr4 (215-246)||(12528078-12528109)
[»] scaffold0229 (1 HSPs)
scaffold0229 (1-217)||(12779-12997)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 12474099 - 12473883
Alignment:
Q  1 tttggaattatgtttacctttctctatttatgttacatcaaggaaacaaagatttatctattatgttttggtacttactttacggagtcattttgagatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||||||||||||||    
T  12474099 tttggaattatgtttacctttctctatttatgttacatcaaggaaacaaggatttacctattatgttttggtacttactttgtggagtcattttgagatg 12474000  T
Q  101 ttgtgagatgactcgcgtgtttgagaaaattgatcctaaaacctttatttagtcattcttattattatgttttgtgtgatttgtatgtgaagaaatgtga 200  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12473999 ttgtaggatgactcgcgtgtttgagaaaattgatcctaaaacctttatttagtcattcttattactatgttttgtgtgatttgtatgtgaagaaatgtga 12473900  T
Q  201 tatcctaaacctacccg 217  Q
    |||||||||||||||||    
T  12473899 tatcctaaacctacccg 12473883  T

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Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 12528508 - 12528292
Alignment:
Q  1 tttggaattatgtttacctttctctatttatgttacatcaaggaaacaaagatttatctattatgttttggtacttactttacggagtcattttgagatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||||||||||||||    
T  12528508 tttggaattatgtttacctttctctatttatgttacatcaaggaaacaaggatttacctattatgttttggtacttactttgtggagtcattttgagatg 12528409  T
Q  101 ttgtgagatgactcgcgtgtttgagaaaattgatcctaaaacctttatttagtcattcttattattatgttttgtgtgatttgtatgtgaagaaatgtga 200  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12528408 ttgtaggatgactcgcgtgtttgagaaaattgatcctaaaacctttatttagtcattcttattactatgttttgtgtgatttgtatgtgaagaaatgtga 12528309  T
Q  201 tatcctaaacctacccg 217  Q
    |||||||||||||||||    
T  12528308 tatcctaaacctacccg 12528292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 12464143 - 12464088
Alignment:
Q  153 tcattcttattattatgttttgtgtgatttgtatgtgaagaaatgtgatatcctaa 208  Q
    |||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||    
T  12464143 tcattcttcttaatatgttttgtgtgatttgtatgtgaagaaaggtgatatcctaa 12464088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 12464276 - 12464174
Alignment:
Q  5 gaattatgtttacctttctctatttatgttacatcaaggaaacaaagatttatctattatgttttggtacttactttacggagtcattttgagatgttgt 104  Q
    ||||||||| |  ||| ||||||||||||||||||| || |  || |||| |||| ||||||||| ||||||| |||  |||||||||||||||||||||    
T  12464276 gaattatgtatttcttgctctatttatgttacatcaggggaggaaggatt-atcttttatgttttagtacttattttgtggagtcattttgagatgttgt 12464178  T
Q  105 gaga 108  Q
    ||||    
T  12464177 gaga 12464174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 12473700 - 12473669
Alignment:
Q  215 ccgcttaagatatggtagtcattcatctctct 246  Q
    ||||||||||||||||||||||||||||||||    
T  12473700 ccgcttaagatatggtagtcattcatctctct 12473669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 12528109 - 12528078
Alignment:
Q  215 ccgcttaagatatggtagtcattcatctctct 246  Q
    ||||||||||||||||||||||||||||||||    
T  12528109 ccgcttaagatatggtagtcattcatctctct 12528078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 12779 - 12997
Alignment:
Q  1 tttggaattatgtttacctttctctatttatgttacatcaaggaaacaaagatttatctattatgttttggtacttactttacggagtcattttg-agat 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||||||||| ||||    
T  12779 tttggaattatgtttacctttctctatttatgttacatcaaggaaacaaggatttacctattatgttttggtacttactttgtggagtcattttgtagat 12878  T
Q  100 gttgtgagatgactcgcgtgtttgagaaaattgatcctaaaaccttt-atttagtcattcttattattatgttttgtgtgatttgtatgtgaagaaatgt 198  Q
    |||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12879 gttgtaggatgactcgcgtgtttgagaaaattgatcctaaaacctttaatttagtcattcttattactatgttttgtgtgatttgtatgtgaagaaatgt 12978  T
Q  199 gatatcctaaacctacccg 217  Q
    |||||||||||||||||||    
T  12979 gatatcctaaacctacccg 12997  T

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