View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5165_low_42 (Length: 251)
Name: NF5165_low_42
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_low_42 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 52340861 - 52341094
Alignment:
| Q |
9 |
gagatgaatgtttaaatgattgtttggttatttatattaaaatagatacttttattttaatnnnnnnnnnctcttatagtttttatttttaatcaagtag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
52340861 |
gagatgaatgtttaaatgattgtttggttacttatattaaaatagatacttttattttaataaaaa---------atagtttttatttttaatcaagtag |
52340951 |
T |
|
| Q |
109 |
cctagcgattaaatattctccctgaaagtgaataagtgagaaattcagggttcaaaccccaacccttgtatgtcacaatgtccctacaaactatggacga |
208 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52340952 |
cctagcgattaaatattcaccctgaaagtgaataagtgagaaattcagggttcaaaccctgacccttgtatgtcacaatgtccctacaaactatggacga |
52341051 |
T |
|
| Q |
209 |
gatacttttatagatttattggcattgaaaatgaggaattcgt |
251 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
52341052 |
gatacttttatagatttattgacattgaaaatgaggaattcgt |
52341094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 1360863 - 1361021
Alignment:
| Q |
84 |
atagtttttatttttaatcaagtagcctagcgattaaatattctccctgaaagtgaataagtgagaaattcagggttcaaaccccaacccttgtatgtca |
183 |
Q |
| |
|
|||||||||||||||||| |||||| || || ||||||||| |||| || ||||||| ||||| ||||| ||||| ||||| | |||||||||| || |
|
|
| T |
1360863 |
atagtttttatttttaattaagtagtttaatgactaaatattcacccttaaggtgaatatgtgaggaattcggggtttaaacctcgacccttgtatatcg |
1360962 |
T |
|
| Q |
184 |
caatgtccctacaaactatggacgagatacttttatagatttattggcattgaaaatgag |
243 |
Q |
| |
|
|||||| ||||| || | |||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
1360963 |
caatgttcctaccaattgcggacgagata-ttttatagttttattggcattgaaaatgag |
1361021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 1360764 - 1360823
Alignment:
| Q |
9 |
gagatgaatgtttaaatgattgtttggttatttatattaaaatagatacttttattttaa |
68 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||||| ||||||| |||||||| |||| |
|
|
| T |
1360764 |
gagatgaatatttaaataattgtttggttacttatatagaaatagacacttttatattaa |
1360823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 10629570 - 10629814
Alignment:
| Q |
14 |
gaatgtttaaatgattgtttggtta--tttatattaaaatagatacttttattttaatnnnnnnnnnct--cttatagtttttatttttaatcaagtagc |
109 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||| |||| || |||||||||||||||||||||||| | |
|
|
| T |
10629570 |
gaatgtttaaatgattgtttggttacttttatattgaaatagatacttttatattaacaaaaaaaaaaaaactcatagtttttatttttaatcaagtaac |
10629669 |
T |
|
| Q |
110 |
ctagcgattaaatattctccctgaa--------agtgaataagtgagaaattcagggttcaaaccccaacccttgtatgtcacaatgtccctacaaacta |
201 |
Q |
| |
|
||| || ||||||||| ||| || |||||| |||||| ||||| ||||||| | || |||||| ||| || ||||||||||| ||||| |
|
|
| T |
10629670 |
ctaatgactaaatattcatccttaaggatttaaagtgaacaagtgaagaattcgaggttcaacctccgacccttatatatcgcaatgtccctagaaactg |
10629769 |
T |
|
| Q |
202 |
tggacgagatacttttatagatttattggcattgaaaatgaggaa |
246 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10629770 |
tggaggagatacttttatagttttattggcattgaaaatgaggaa |
10629814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 32162049 - 32162100
Alignment:
| Q |
12 |
atgaatgtttaaatgattgtttggttatttatattaaaatagatacttttat |
63 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
32162049 |
atgaatgtttaaatgattgtttgattatttatattaaaagagatacttttat |
32162100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 4451327 - 4451273
Alignment:
| Q |
9 |
gagatgaatgtttaaatgattgtttggttatttatattaaaatagatacttttat |
63 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| || |||||||| |||||||||| |
|
|
| T |
4451327 |
gagatgaaagtttaaatgattgtttgattattcatgttaaaataaatacttttat |
4451273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 55359599 - 55359653
Alignment:
| Q |
10 |
agatgaatgtttaaatgattgtttggttatttatattaaaatagatacttttatt |
64 |
Q |
| |
|
||||||||| ||||| ||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
55359599 |
agatgaatgattaaacgattgtttggttacatatattaaaaatgatacttttatt |
55359653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 10983266 - 10983310
Alignment:
| Q |
19 |
tttaaatgattgtttggttatttatattaaaatagatacttttat |
63 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
10983266 |
tttaaatgattgttcaattatttatattaaaatggatacttttat |
10983310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University