View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165_low_46 (Length: 247)
Name: NF5165_low_46
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_low_46 |
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| [»] scaffold0157 (2 HSPs) |
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Alignment Details
Target: scaffold0157 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 37469 - 37289
Alignment:
| Q |
1 |
aacaataaattcaggacaaaaatggaaaaaa-tatacacataggaaaacaatgcttagattatgacactgaaaaggtataatgttcatagcataaaataa |
99 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37469 |
aacaataaattcaggacaaaaatggaaaaaaatatacacataagaaaaccatgcatagattatgacactgaaaaagtataatgttcatagcataaaataa |
37370 |
T |
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| Q |
100 |
gacacagttcagataggaaatttgcacacatcacaattaaatagatatacttcttatttaccaatggtcgtaacacaagtc |
180 |
Q |
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| T |
37369 |
gacacggttcagatagaaaatttgcacacatcacaattaactagatatacttcttatttaccattggtcgtaacacaagtc |
37289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 37129 - 37082
Alignment:
| Q |
185 |
aaatgcaactaattcaaaaataaagtaattttcaacatgagaaagttat |
233 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
37129 |
aaatgcaactaattcaaaa-taaagtaaatttcaacatgagaaagttat |
37082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 12483008 - 12483188
Alignment:
| Q |
1 |
aacaataaattcaggacaaaaatggaaaa-aatatacacataggaaaacaatgcttagattatgacactgaaaaggtataatgttcatagcataaaataa |
99 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12483008 |
aacaataaattcaggacaaaaatggaaaaaaatatacacataagaaaaccatgcatagattatgacactgaaaaagtataatgttcatagcataaaataa |
12483107 |
T |
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| Q |
100 |
gacacagttcagataggaaatttgcacacatcacaattaaatagatatacttcttatttaccaatggtcgtaacacaagtc |
180 |
Q |
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| T |
12483108 |
gacacggttcagatagaaaatttgcacacatcacaattaactagatatacttcttatttaccattggtcgtaacacaagtc |
12483188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 12464439 - 12464565
Alignment:
| Q |
1 |
aacaataaattcaggacaaaaatggaaaaaatatacacataggaaaacaatgcttagattatgacactgaaaaggtataatgttcatagcataaaataag |
100 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| |||| || |
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| T |
12464439 |
aacaataatttcaggacaaaagtggaaaaaatatacacataggaaaacaatgcatagattatgacactaaaatagtataatgttcatagcacaaaagaaa |
12464538 |
T |
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| Q |
101 |
acacagttcagataggaaatttgcaca |
127 |
Q |
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||||| |||| |||||||||||||||| |
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| T |
12464539 |
acacaattcatataggaaatttgcaca |
12464565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 12483348 - 12483395
Alignment:
| Q |
185 |
aaatgcaactaattcaaaaataaagtaattttcaacatgagaaagttat |
233 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
12483348 |
aaatgcaactaattcaaaa-taaagtaaatttcaacatgagaaagttat |
12483395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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