View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5165_low_5 (Length: 506)

Name: NF5165_low_5
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5165_low_5
NF5165_low_5
[»] chr2 (2 HSPs)
chr2 (12-491)||(9041649-9042125)
chr2 (390-432)||(6637022-6637064)
[»] chr6 (3 HSPs)
chr6 (12-463)||(8962601-8963056)
chr6 (12-463)||(8956299-8956756)
chr6 (125-446)||(24702333-24702654)
[»] chr8 (3 HSPs)
chr8 (152-491)||(9522243-9522590)
chr8 (12-208)||(9811893-9812089)
chr8 (391-463)||(1322627-1322699)
[»] chr3 (2 HSPs)
chr3 (12-348)||(41170913-41171260)
chr3 (403-457)||(19145910-19145964)
[»] chr1 (6 HSPs)
chr1 (12-149)||(1862601-1862738)
chr1 (12-149)||(1871779-1871916)
chr1 (63-232)||(34820731-34820899)
chr1 (210-287)||(44404018-44404095)
chr1 (26-283)||(26487353-26487610)
chr1 (391-463)||(26487169-26487241)
[»] chr4 (7 HSPs)
chr4 (47-242)||(36753246-36753440)
chr4 (160-258)||(34759872-34759970)
chr4 (12-115)||(34760221-34760324)
chr4 (139-434)||(3241180-3241478)
chr4 (168-263)||(39718096-39718191)
chr4 (17-234)||(39717896-39718102)
chr4 (403-439)||(27026069-27026105)
[»] chr5 (4 HSPs)
chr5 (214-470)||(16639659-16639921)
chr5 (100-166)||(16639587-16639653)
chr5 (204-289)||(16970058-16970143)
chr5 (45-88)||(14532880-14532923)
[»] chr7 (4 HSPs)
chr7 (32-452)||(38159560-38159985)
chr7 (106-287)||(47397094-47397275)
chr7 (12-103)||(37093066-37093157)
chr7 (142-230)||(37093174-37093262)


Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 12 - 491
Target Start/End: Complemental strand, 9042125 - 9041649
Alignment:
Q  12 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||   ||||||||    
T  9042125 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctgtctcccaacataactttataccaatcaac---gtttgaat 9042029  T
Q  112 ctcagcatgtaaaatattcgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaacccaccatagttcgcctttcct 211  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9042028 ctcagcatgtaaaatatttgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaacccaccatagttcgcctttcct 9041929  T
Q  212 gaattgttcaaagcacttccatcaacattgagaattatggtgtcctcgtccccatgctgccaactcaccatccttgaaatgggaataagagtcaccagtg 311  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||    
T  9041928 gaattgttcaaagcacttccatcatcattgagaattaaggtgtcctcgtccccatgctgccaactcaccatccttggagtgggaataagagtcactaatg 9041829  T
Q  312 agtaccaaaagctttgtgtgcaagatgaagttgggaaaatattgtcgcgacaatcgagtgcataactagatgaatattgtcaaaaactagtttgtttctt 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9041828 agtaccaaaagctttgtgtgcaagatgaagttgggaaaatattgtcgcgacaatcgagtgtataactagatgaatattgtcaaaaactagtttgtttctt 9041729  T
Q  412 gtacaccaaatattccacataatcaaaggtgcaaggattccaatatccttcattgttttatggattaccttagctatatt 491  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9041728 gtacaccaaatattccacataatcaaaggtgcaaggattccaatatccttcactgttttatggattaccttagctatatt 9041649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 432
Target Start/End: Complemental strand, 6637064 - 6637022
Alignment:
Q  390 gtcaaaaactagtttgtttcttgtacaccaaatattccacata 432  Q
    ||||||| |||| ||||||||||| ||||||||||||||||||    
T  6637064 gtcaaaacctagcttgtttcttgtgcaccaaatattccacata 6637022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 463
Target Start/End: Original strand, 8962601 - 8963056
Alignment:
Q  12 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 111  Q
    |||||| ||||| ||| ||||||| ||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||| |  |||||||| ||||||    
T  8962601 tcatcagcaactgtactacatgaagagagtcggagaaacatataagctttctataacttgtctcccaacataactttatactattcaacaacgcttgaat 8962700  T
Q  112 ctcagcatgtaaaatattcgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaacccaccatagttcgcctttcct 211  Q
    || || |||||||||||| ||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||| |    
T  8962701 ctaagtatgtaaaatatttgagatccacacgctaccaaagaaaccaggaaggaatcttccatcgtgcttacgtattaacccatcatagttcgcctttctt 8962800  T
Q  212 gaattgttcaaagcacttccatcaacattgagaattatggtgtcctcgtccccatgctgccaactcaccatccttgaaatgggaataagagtcacca--- 308  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    | |||||| |||||||||       
T  8962801 gaattgttcaaagcacttccatcaacattgaaaattatgatgtcctcgtccccatgctgccaactcaccatcctttggtttggaataggagtcaccaaag 8962900  T
Q  309 -gtgagtaccaaaagctttgtgtgcaagatgaagttgggaaaatattgtcgcgacaatcgagtgcataactagatgaatattgtcaaaaactagtttgtt 407  Q
     || ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||  | ||||||||||||||||||||||||||||    
T  8962901 ggtcagtaccaaaagctttgtgtgcaagaagaagttgggaaaatattgtcgcgacagtcgagtgcatatttggatgaatattgtcaaaaactagtttgtt 8963000  T
Q  408 tcttgtacaccaaatattccacataatcaaaggtgcaaggattccaatatccttca 463  Q
    |||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||    
T  8963001 tcttgtacacaaaatatttcacataatcaaaggtgcaaggatcccaatatccttca 8963056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 463
Target Start/End: Complemental strand, 8956756 - 8956299
Alignment:
Q  12 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 111  Q
    |||||| ||||| ||| ||||||| ||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||| |  | |||||| ||||||    
T  8956756 tcatcagcaactgtactacatgaagagagtcggagaaacatataagctttctataacttgtctcccaacataactttatactattcgacaacgcttgaat 8956657  T
Q  112 ctcagcatgtaaaatattcgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaacccaccatagttcgcctttcct 211  Q
    || || |||||||||||| ||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||| |    
T  8956656 ctaagtatgtaaaatatttgagatccacacgctaccaaagaaaccaggaaggaatcttccatcgtgcttacgtattaacccatcatagttcgcctttctt 8956557  T
Q  212 gaattgttcaaagcacttccatcaacattgagaattatggtgtcctcgtccccatgctgccaactcaccatccttgaaatgggaataagagtcacca--- 308  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    | |||||| |||||||||       
T  8956556 gaattgttcaaagcacttccatcaacattgagaattatgatgtcctcgcccccatgctgccaactcaccatcctttggtttggaataggagtcaccaaat 8956457  T
Q  309 -gtgagtaccaaaagctttgtgtgcaagatgaagttgggaaaatattgtcgcgacaat--cgagtgcataactagatgaatattgtcaaaaactagtttg 405  Q
     || ||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |  ||||||||||  |  | ||||||||||| |||||| ||||    
T  8956456 ggtcagtaccaaaagctttgtgtgcaagaagaagttggaaaaattttgtcgcgacagtcgcgagtgcatatttgcacgaatattgtcacaaactaatttg 8956357  T
Q  406 tttcttgtacaccaaatattccacataatcaaaggtgcaaggattccaatatccttca 463  Q
    |||||||||||| ||||||| |||||||||||||||||||||||  ||||||||||||    
T  8956356 tttcttgtacacaaaatatttcacataatcaaaggtgcaaggatctcaatatccttca 8956299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 125 - 446
Target Start/End: Complemental strand, 24702654 - 24702333
Alignment:
Q  125 atattcgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaacccaccatagttcgcctttcctgaattgttcaaag 224  Q
    ||||| |||||||| || |||||||| |||||| |  | ||||||||||||||||||||    |  |||| |||    |||||||||| |||  |||| |    
T  24702654 atatttgagatccctacactaccaaagaaaccaagttgaaaacttccatcgtgcttacg----agaccacaataacctgcctttcctggatttgtcaacg 24702559  T
Q  225 cacttccatcaacattgagaattatggtgtcctcgtccccatgctgccaactcaccatccttgaaatgggaataagagtcacc----agtgagtaccaaa 320  Q
    | |||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||| | |  || |  ||||| ||    ||| |||||||||    
T  24702558 cgcttccatcaacattgagaaccatggtgtcctcgtccccatgccgccaactcaccatccttggagtatgagtttgagtctccagggagttagtaccaaa 24702459  T
Q  321 agctttgtgtgcaagatgaagttgggaaaatattgtcgcgacaatcgagtgcataactagatgaatattgtcaaaaactagtttgtttcttgtacaccaa 420  Q
    ||| | ||| ||||||||| | |||||||| || ||  ||||  |||| |||||   | | || ||||| |||||||||| |||||||||||||||||||    
T  24702458 agcctggtgagcaagatgatgctgggaaaaaatagttacgactgtcgaatgcatgtttggttggatattatcaaaaactaatttgtttcttgtacaccaa 24702359  T
Q  421 atattccacataatcaaaggtgcaag 446  Q
    ||||||||||||||||||| ||||||    
T  24702358 atattccacataatcaaagctgcaag 24702333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 152 - 491
Target Start/End: Complemental strand, 9522590 - 9522243
Alignment:
Q  152 aaaccacgaaggaaacttccatcgtgcttacgtattaacccaccatagttcgcctttcctgaattgttcaaagcacttccatcaacattga----gaatt 247  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||| ||||||||||||||||||||||||||| |    |||||    
T  9522590 aaaccacgaaggaaacttccatcgtgcttacatattaacccaccattgcccgcctttcctggattgttcaaagcacttccatcaacattaattaagaatt 9522491  T
Q  248 atggtgtcctcgtccccatgctgccaactcaccatccttgaaatgggaataagagtcacca----gtgagtaccaaaagctttgtgtgcaagatgaagtt 343  Q
    ||||||||||||| |||||||| ||||||||||||||||| | |||||||| || ||||||    || ||||||||||||||||||||||||||||||||    
T  9522490 atggtgtcctcgttcccatgctaccaactcaccatccttggagtgggaataggaatcaccaaggagtcagtaccaaaagctttgtgtgcaagatgaagtt 9522391  T
Q  344 gggaaaatattgtcgcgacaatcgagtgcataactagatgaatattgtcaaaaactagtttgtttcttgtacaccaaatattccacataatcaaaggtgc 443  Q
    || |||||||||||| |||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9522390 ggaaaaatattgtcgtgacaatcgagtgcatatctggacgaatattgtcaaaaactagtttgtttcttgtacaccaaatattccacataatcaaaggtgc 9522291  T
Q  444 aaggattccaatatccttcattgttttatggattaccttagctatatt 491  Q
    |||||| ||||||||||||| | |||| |||||||||||| |||||||    
T  9522290 aaggatcccaatatccttcactattttgtggattaccttaactatatt 9522243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 9811893 - 9812089
Alignment:
Q  12 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 111  Q
    |||||| ||||| ||||| ||||| |||||| |||||||||||||| ||||||| ||||  || |||||||||||||| |  |  |||||||||||||||    
T  9811893 tcatcatcaactgtaccatatgaagagagtcaaagaaacacataagttttctatgacctgccttccaacataactttaaataagtcaacaacgtttgaat 9811992  T
Q  112 ctcagcatgtaaaatattcgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaacccaccatagttcgccttt 208  Q
    || || |||||  ||||| ||||||||||| | |||||| |||||| ||||||||||||||||||||||||||||||| |||| ||||  |||||||    
T  9811993 cttagtatgtaggatatttgagatccccacacaaccaaagaaaccaagaaggaaacttccatcgtgcttacgtattaatccactatagcccgccttt 9812089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 1322699 - 1322627
Alignment:
Q  391 tcaaaaactagtttgtttcttgtacaccaaatattccacataatcaaaggtgcaaggattccaatatccttca 463  Q
    ||||||||||  ||||||||| | ||| ||||||||||||| || ||||| ||||| ||||||||||| ||||    
T  1322699 tcaaaaactaacttgtttcttatgcactaaatattccacatgattaaaggagcaagaattccaatatcattca 1322627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 348
Target Start/End: Complemental strand, 41171260 - 41170913
Alignment:
Q  12 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 111  Q
    |||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| | | |||||||||||||||||||  ||| |||| ||||||    
T  41171260 tcatcaccaactgtaccacatgaagagagtcggagaaacacataagctttctataacctgttttccaacataactttataccagtcaaaaacgcttgaat 41171161  T
Q  112 ctcagcatgtaaaatattcgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgc-------ttacgtattaacccaccatagttcgc 204  Q
    ||||||||||||||||||| |||||||||  |||||||| |||||||||||||||||||||||||||       ||| |||||||| ||||||||  |||    
T  41171160 ctcagcatgtaaaatattcaagatccccatactaccaaagaaaccacgaaggaaacttccatcgtgcttgcgtattaagtattaactcaccatagcccgc 41171061  T
Q  205 ctttcctgaattgttcaaagcacttccatcaacattgagaattatggtgtcctcgtccccatgctgccaactcaccatccttgaaatgggaataagagtc 304  Q
    |||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||    
T  41171060 ctttccttgattgttcaaagcacttcaatcaacattgagaattatggtgtcctcgtccccatgctgccaactcaccatccttggagtgggaatatgagtc 41170961  T
Q  305 ac----cagtgagtaccaaaagctttgtgtgcaagatgaagttgggaa 348  Q
    ||     ||| ||||||||||||| |||||||||||||||||||||||    
T  41170960 actaatgagtcagtaccaaaagctctgtgtgcaagatgaagttgggaa 41170913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 457
Target Start/End: Original strand, 19145910 - 19145964
Alignment:
Q  403 ttgtttcttgtacaccaaatattccacataatcaaaggtgcaaggattccaatat 457  Q
    |||||||||||||| |||||||  |||||||||||||||||||| |||| |||||    
T  19145910 ttgtttcttgtacatcaaatatcacacataatcaaaggtgcaagaattcgaatat 19145964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 1862601 - 1862738
Alignment:
Q  12 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 111  Q
    |||||||||||| ||||| ||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||| |||| |||| |||| || |||    
T  1862601 tcatcaccaactgtaccatatgaagagagtcggagaaacacataagctttctataacatgtctcccaacataactttagaccagccaataacgcttaaat 1862700  T
Q  112 ctcagcatgtaaaatattcgagatccccacgctaccaa 149  Q
    || | ||| |||||||||||||||||||||||||||||    
T  1862701 ctaaacatataaaatattcgagatccccacgctaccaa 1862738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 1871779 - 1871916
Alignment:
Q  12 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 111  Q
    |||||||||  | ||||||||||| ||||||| |||||||||||| ||||||||||| | |||||||||||||||||| || | |||| |||| || |||    
T  1871779 tcatcaccagttgtaccacatgaagagagtcggagaaacacataaactttctataacttgtctcccaacataactttagactagccaataacgcttaaat 1871878  T
Q  112 ctcagcatgtaaaatattcgagatccccacgctaccaa 149  Q
    || | ||  |||||||||||||||||||||||||||||    
T  1871879 ctaaacaaataaaatattcgagatccccacgctaccaa 1871916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 63 - 232
Target Start/End: Original strand, 34820731 - 34820899
Alignment:
Q  63 tataacctatctcccaacataactttataccaaccaacaacgtttgaatctcagcatgtaaaatattcgagatccccacgctaccaaataaaccacgaag 162  Q
    |||||||| |||||||||||||||||||||||| ||||||   |||||||||||||||||  |||||| |||||||  | |||| ||| ||| || ||||    
T  34820731 tataacctgtctcccaacataactttataccaatcaacaaaacttgaatctcagcatgtaggatattcaagatccctccactactaaaaaaatcaagaag 34820830  T
Q  163 gaaacttccatcgtgcttacgtattaacccaccatagttcgcctttcctgaattgttcaaagcacttcca 232  Q
    |||||| ||||| || |||| |||| | |||||||| | |   |||||| ||||| ||||||||||||||    
T  34820831 gaaactcccatcatgtttac-tattgaaccaccataatccatttttcctcaattggtcaaagcacttcca 34820899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 44404018 - 44404095
Alignment:
Q  210 ctgaattgttcaaagcacttccatcaacattgagaattatggtgtcctcgtccccatgctgccaactcaccatccttg 287  Q
    |||||||  ||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||||||||    
T  44404018 ctgaatttgtcaaagcacttccatcaacattgaggatcatggtgtcctcatctccatgctgccaactcaccatccttg 44404095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 283
Target Start/End: Complemental strand, 26487610 - 26487353
Alignment:
Q  26 accacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaatctcagcatgtaaaa 125  Q
    |||||||||| ||||||  || |||||||||| ||| |||| |||  ||||||||| ||||| || |||| | | |  | ||||||||||||||| |  |    
T  26487610 accacatgaagagagtcagagtaacacataagttttttatagcctgcctcccaacacaacttaattccaatccagagagcttgaatctcagcatgaagga 26487511  T
Q  126 tattcgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaacccaccatagttcgcctttcctgaattgttcaaagc 225  Q
    ||||  |||||||||| ||  | || |||||| |  ||||| | || ||||||||||  ||||  ||||||||   | | ||||||  |||   ||||||    
T  26487510 tattaaagatccccacactttcgaaaaaaccaagttggaaattgccgtcgtgcttactaattagaccaccataacccacttttcctagatttgccaaagc 26487411  T
Q  226 acttccatcaacattgagaattatggtgtcctcgtccccatgctgccaactcaccatc 283  Q
    |||||||||||||||||| || ||||||||||| || ||||| |||||| ||||||||    
T  26487410 acttccatcaacattgaggatcatggtgtcctcatctccatgttgccaagtcaccatc 26487353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 26487241 - 26487169
Alignment:
Q  391 tcaaaaactagtttgtttcttgtacaccaaatattccacataatcaaaggtgcaaggattccaatatccttca 463  Q
    ||||||| ||| ||||||||||| ||||||||||||||||| || ||||| ||||| |||| |||||| ||||    
T  26487241 tcaaaaattagcttgtttcttgtgcaccaaatattccacatgattaaaggagcaagaattcaaatatcattca 26487169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 47 - 242
Target Start/End: Complemental strand, 36753440 - 36753246
Alignment:
Q  47 aaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaatctcagcatgtaaaatattcgagatccccacgctac 146  Q
    ||||||||||||||||||||||||| ||||||||||||||| | ||||  | | ||   |||||||||| ||||||  ||||||||||||||||| ||||    
T  36753440 aaacacataagctttctataacctacctcccaacataactt-acaccagtcgaaaatacttgaatctcaacatgtaggatattcgagatccccacactac 36753342  T
Q  147 caaataaaccacgaaggaaacttccatcgtgcttacgtattaacccaccatagttcgcctttcctgaattgttcaaagcacttccatcaacattga 242  Q
    |||| |||||| |||| |||||||| || |||| || |||||| ||||||||   | | ||||||| |||| ||||||||||| |||| |||||||    
T  36753341 caaagaaaccaagaagaaaacttccttcatgctaacatattaatccaccataacccacttttcctggattgatcaaagcactttcatcgacattga 36753246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 34759970 - 34759872
Alignment:
Q  160 aaggaaacttccatcgtgcttacgtattaacccaccatagttcgcctttcctgaattgttcaaagcacttccatcaacattgagaattatggtgtcctc 258  Q
    |||||||||||||||||||||||||||||||||| ||||   || |||||||  ||||||||||||||||||||||||||||||||||| |||||||||    
T  34759970 aaggaaacttccatcgtgcttacgtattaacccatcatatcccgtctttcctcgattgttcaaagcacttccatcaacattgagaattacggtgtcctc 34759872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 34760324 - 34760221
Alignment:
Q  12 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaat 111  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||||||  |||| ||| ||||||    
T  34760324 tcatcaccaactgtaccacatgaagagagtcggagaaacacataagctttctataatctgcctcccaacataactttataccagtcaactacgcttgaat 34760225  T
Q  112 ctca 115  Q
    ||||    
T  34760224 ctca 34760221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 139 - 434
Target Start/End: Original strand, 3241180 - 3241478
Alignment:
Q  139 cacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaacccaccatagttcgcctttcctgaattgttcaaagcacttccatcaaca 238  Q
    |||||||||||| |||||| |  | |||||||||||||||||||  ||||  ||| ||||  | ||||||| || ||||| ||| ||||||||||||| |    
T  3241180 cacgctaccaaagaaaccaagttgaaaacttccatcgtgcttacaaattagaccatcataacttgcctttcttggattgt-caacgcacttccatcaata 3241278  T
Q  239 ttgagaattatggtgtcctcgtccccatgctgccaactcaccatccttgaaatgggaataagagtcacc----agtgagtaccaaaagctttgtgtgcaa 334  Q
    |||||||| ||| | ||||| |||||||||||||||||||||||||||| | |  || || ||||  ||    ||| |||||||||||| |  || ||||    
T  3241279 ttgagaatcatgatatcctcatccccatgctgccaactcaccatccttggagtatgagtacgagtatccaaggagttagtaccaaaagcctgatgagcaa 3241378  T
Q  335 gatgaagttgggaaaatattgtcgcgacaatcgagtgcataactagatgaatattgtcaaaaactagtttgtttcttgtacaccaaatattccacataat 434  Q
    ||||| |||||||||| || || |||||  || | | |||   | | || ||||| ||||||||||   ||||| |||||||||||||||||||||||||    
T  3241379 gatgatgttgggaaaaaatagttgcgaccgtcaaatacatgtttggttggatattatcaaaaactaacatgttttttgtacaccaaatattccacataat 3241478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 168 - 263
Target Start/End: Original strand, 39718096 - 39718191
Alignment:
Q  168 ttccatcgtgcttacgtattaacccaccatagttcgcctttcctgaattgttcaaagcacttccatcaacattgagaattatggtgtcctcgtccc 263  Q
    ||||||| |||||||||||| | ||||||||| ||| |||| |||||||| |||||||||||||||||||||| |||||||||||| |||| ||||    
T  39718096 ttccatcttgcttacgtattcatccaccatagctcgtcttttctgaattggtcaaagcacttccatcaacatttagaattatggtgacctcatccc 39718191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 39717896 - 39718102
Alignment:
Q  17 accaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaatctcag 116  Q
    ||||||| ||| ||||||| ||||||  ||||||| |||| ||||||||||| |  || | |||||||||||| || |  |||||||  ||||||||||     
T  39717896 accaactatactacatgaagagagtcagagaaacatataaactttctataacatgcctactaacataactttacacgagtcaacaacacttgaatctcaa 39717995  T
Q  117 catgtaaaatattcgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaacccaccatagttcgcctttcctgaatt 216  Q
    || ||| |||||| ||||||           ||| |||||| ||||||||||||||| ||||||||||||||| |||||||||  || |||| ||| |||    
T  39717996 cacgtacaatattagagatc-----------aaacaaaccaagaaggaaacttccattgtgcttacgtattaatccaccatagcccgtcttttctggatt 39718084  T
Q  217 gttcaaagcacttccatc 234  Q
    | |||||||| |||||||    
T  39718085 ggtcaaagcatttccatc 39718102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 27026069 - 27026105
Alignment:
Q  403 ttgtttcttgtacaccaaatattccacataatcaaag 439  Q
    ||||||||||||||||||||||| |||||||||||||    
T  27026069 ttgtttcttgtacaccaaatatttcacataatcaaag 27026105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 214 - 470
Target Start/End: Original strand, 16639659 - 16639921
Alignment:
Q  214 attgttcaaagcacttccatcaacattgagaattatggtgtcctcgtccccatgctgccaactcaccatccttgaaatgggaataagagtcacc----ag 309  Q
    |||| |||||| |||| ||||| |||||||||| |||||||| |||||||||||| |||||||||||||||||| | || | ||| ||| || |    ||    
T  16639659 attggtcaaagaactttcatcatcattgagaatcatggtgtcttcgtccccatgccgccaactcaccatccttggagtgtggatacgagccatcaaggag 16639758  T
Q  310 tgagtaccaaaagctttgtgtgcaagatgaagttgg--gaaaatattgtcgcgacaatcgagtgcataactagatgaatattgtcaaaaactagtttgtt 407  Q
      |||||||||||||| || |||| |||||||||||   |||| || ||  |||| |||||| ||||| || | |||||||| || |||||| |||||||    
T  16639759 ccagtaccaaaagcttggtctgcatgatgaagttggaaaaaaaaatcgttccgaccatcgagggcatatctggctgaatattatccaaaacttgtttgtt 16639858  T
Q  408 tcttgtacaccaaatattccacataatcaaaggtgcaaggattccaatatccttcattgtttt 470  Q
    | | | |||||| ||||||||||||||||||| || ||  || ||||||||| ||||| ||||    
T  16639859 tttcgaacaccacatattccacataatcaaagatgaaataatcccaatatccctcattatttt 16639921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 16639587 - 16639653
Alignment:
Q  100 caacgtttgaatctcagcatgtaaaatattcgagatccccacgctaccaaataaaccacgaaggaaa 166  Q
    ||||| |||||||||| ||||||  ||||||||||||||||| |||||||| |||||| ||||||||    
T  16639587 caacgcttgaatctcaccatgtaggatattcgagatccccacactaccaaagaaaccaagaaggaaa 16639653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 16970143 - 16970058
Alignment:
Q  204 cctttcctgaattgttcaaagcacttccatcaacattgagaattatggtgtcctcgtccccatgctgccaactcaccatccttgaa 289  Q
    |||||| ||||||  |||| || |||| ||||||||||||||  ||| ||||||| |||| ||  |||||||||||||||||||||    
T  16970143 cctttcttgaatttgtcaacgcgcttctatcaacattgagaaccatgatgtcctcatccctatattgccaactcaccatccttgaa 16970058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 14532923 - 14532880
Alignment:
Q  45 agaaacacataagctttctataacctatctcccaacataacttt 88  Q
    ||||||||||||| ||||||||||||| || |||||||||||||    
T  14532923 agaaacacataagttttctataacctaccttccaacataacttt 14532880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 32 - 452
Target Start/End: Original strand, 38159560 - 38159985
Alignment:
Q  32 tgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaacgtttgaatctcagcatgtaaaatattcg 131  Q
    |||| |||||||||| | || || |||||| |||| |||   |||||||| || |||||||||  ||| |  | |||||| ||||||||||  ||||| |    
T  38159560 tgaagagagtcgaagtagcatatgagctttttatatcctgcatcccaacacaattttataccagtcaatagagcttgaatttcagcatgtatgatatttg 38159659  T
Q  132 agatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaacccaccatagttcgcctttcc--tgaattgttcaaagcactt 229  Q
    |||||||  | |||||||||||| ||    | |||||||||||||||||||| ||||  ||||||||    |||||||   || |||  |||| || |||    
T  38159660 agatccctgcactaccaaataaatcaacttgaaaacttccatcgtgcttacgaattagaccaccataacctgcctttctattgtatttgtcaacgcgctt 38159759  T
Q  230 ccatcaacattgagaattatggtgtcctcgtccccatgctgccaactcaccatccttgaaatgggaataagagtcacca----gtgagtaccaaaagctt 325  Q
    ||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||  ||| |  || ||||  |||    || |||||||||||| |    
T  38159760 ccatcaacattgagaatcatggtgtcctcatctccatgttgccaactcaccatccttggtatgag--tacgagtatccaaggagttagtaccaaaagcct 38159857  T
Q  326 tgtgtgcaagatgaagttgggaaaatatt-gtcgcgacaatcgagtgcataactagatgaatattgtcaaaaactagtttgtttcttgtacaccaaatat 424  Q
     ||| ||||||||| | || ||||| | | ||  | ||  | || |||||   | | || ||||| ||||||||||  ||||||||||||||||||||||    
T  38159858 ggtgagcaagatgatgctgagaaaaaaatagttacaacggttgaatgcatgtttggttggatattatcaaaaactaacttgtttcttgtacaccaaatat 38159957  T
Q  425 tccacataatcaaaggtgcaaggattcc 452  Q
    |||||||||||||||||||||| |||||    
T  38159958 tccacataatcaaaggtgcaagaattcc 38159985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 287
Target Start/End: Original strand, 47397094 - 47397275
Alignment:
Q  106 ttgaatctcagcatgtaaaatattcgagatccccacgctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaacccaccatagttcgcc 205  Q
    |||||| ||||||||||  ||||| ||||| || || |||||||| |||||| |  | |||||| ||||||||||||| ||||  ||||||||    |||    
T  47397094 ttgaatttcagcatgtaggatatttgagatacctacactaccaaagaaaccaagctgaaaactttcatcgtgcttacgaattagaccaccataacatgcc 47397193  T
Q  206 tttcctgaattgttcaaagcacttccatcaacattgagaattatggtgtcctcgtccccatgctgccaactcaccatccttg 287  Q
    ||||||| |||  |||| || |||||||||||||||||||| |||| |||||| ||||| || || ||||||||||||||||    
T  47397194 tttcctggatttgtcaacgcgcttccatcaacattgagaatcatggcgtcctcatccccgtgttgtcaactcaccatccttg 47397275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 37093066 - 37093157
Alignment:
Q  12 tcatcaccaactctaccacatgaatagagtcgaagaaacacataagctttctataacctatctcccaacataactttataccaaccaacaac 103  Q
    ||||||| |||| ||||||||||| ||||||| |||||||    |||||||||||||||   ||| |||||||||||||||||| |||||||    
T  37093066 tcatcactaactgtaccacatgaagagagtcggagaaacatgcgagctttctataacctccttccgaacataactttataccaatcaacaac 37093157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 37093174 - 37093262
Alignment:
Q  142 gctaccaaataaaccacgaaggaaacttccatcgtgcttacgtattaacccaccatagttcgcctttcctgaattgttcaaagcacttc 230  Q
    ||||||||| |||||| |||| || ||||||||||| |||  |||||||||| |||||  ||||||||||  |||||||| ||||||||    
T  37093174 gctaccaaagaaaccatgaagaaagcttccatcgtgtttaaatattaacccaacatagcccgcctttcctagattgttcagagcacttc 37093262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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