View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165_low_54 (Length: 228)
Name: NF5165_low_54
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_low_54 |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 172477 - 172275
Alignment:
| Q |
13 |
caactatggagaagtagatgaaatctcagcaagatcaatgtgaatgcagaatgaattaagaaaatactcatgatattacaatccctaaggtaagagtacg |
112 |
Q |
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| T |
172477 |
caacaatggagaagcggatgaaatctcagcaagatcaccgtgaatgcgggatgaattaagaaaatactcatgatattacaaatcctaaggtaagagtacg |
172378 |
T |
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| Q |
113 |
aaacctactcgttttgctttcaaaataaatattactgacatgaactataagcaaagagctcagttaaagaccataaacaaagtctgacatgaatcatcac |
212 |
Q |
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| T |
172377 |
aaacctactcgttttgctctcaaaataaatattactgacatgaattataagcaaatagctcagataaagaccataaacaaagtgtgacatgaatcatcac |
172278 |
T |
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| Q |
213 |
atg |
215 |
Q |
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||| |
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| T |
172277 |
atg |
172275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 31044906 - 31045116
Alignment:
| Q |
6 |
acattaccaactatggagaagtagatgaaatctcagcaagatcaatgtgaatgcagaatgaattaagaaaatactcatgatattacaatccctaaggtaa |
105 |
Q |
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| T |
31044906 |
acattaccaacaatggagaagcagatgaaatctcagcaagatcactgtgaatgcagaatgaattgagaaaatactcatgatactacaaaccctatggtaa |
31045005 |
T |
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| Q |
106 |
gagtacgaaacctactcgttttgctttcaaaataaatattactgacatgaactataagcaaagagctcagttaaagaccataaacaaagtctgacatgaa |
205 |
Q |
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| T |
31045006 |
gagtacgaaacctactcgttttgcgttcaaaatcaa---aactgacatgaactataagcaaagagctcagataaagaccataaac--agtctgacatgaa |
31045100 |
T |
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| Q |
206 |
tcatcacatgcaaggt |
221 |
Q |
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| T |
31045101 |
tcatctcatgcaaggt |
31045116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 18412 - 18250
Alignment:
| Q |
18 |
atggagaagtagatgaaatctcagcaagatcaatgtgaatgcagaatgaattaagaaaatactcatgatattacaatccctaaggtaagagtacgaaacc |
117 |
Q |
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||||||||| |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||| |||| ||| ||||||||||||| |
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| T |
18412 |
atggagaagcagatgaaatctcagcaagatcactttgaatgcagaatgaattgagaaaatactcatgatattgcaaaccctttggttagagtacgaaacc |
18313 |
T |
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| Q |
118 |
tactcgttttgctttca------aaataaatattactgacatgaactataagcaaagagctca |
174 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |
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| T |
18312 |
tactcgttttgctttcaaaatcaaaataaatattactgacatgaacaataagcaaagaactca |
18250 |
T |
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