View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5165_low_55 (Length: 228)

Name: NF5165_low_55
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5165_low_55
NF5165_low_55
[»] chr1 (10 HSPs)
chr1 (13-211)||(30827182-30827380)
chr1 (14-89)||(29658792-29658867)
chr1 (14-89)||(29691307-29691382)
chr1 (14-89)||(29718819-29718894)
chr1 (17-88)||(33160702-33160773)
chr1 (95-177)||(29659026-29659108)
chr1 (25-82)||(19468340-19468397)
chr1 (22-78)||(9581276-9581332)
chr1 (22-78)||(9586844-9586900)
chr1 (95-163)||(29719053-29719121)
[»] chr6 (1 HSPs)
chr6 (17-83)||(6594439-6594505)
[»] chr4 (3 HSPs)
chr4 (23-91)||(10634273-10634341)
chr4 (26-85)||(55908567-55908626)
chr4 (25-89)||(570542-570606)
[»] chr2 (1 HSPs)
chr2 (26-85)||(1037503-1037562)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 30827380 - 30827182
Alignment:
Q  13 taatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattgtactgatgtcacagagaagggag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30827380 taatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattgtacggatgtcacagagaagggag 30827281  T
Q  113 cgaatcatgtcgttcaaaaatgcacacaactcaaggagatcaatatgagatcttgtgatcaagtgcaaaatcaaagttggaagaagttgaagtagttgt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30827280 cgaatcatgtcgttcaaaaatgcacacaactcaaggagatcaatatgagatcttgtgatcaagtgcaaaatcaaagttggaagaagttgaagtagttgt 30827182  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 29658792 - 29658867
Alignment:
Q  14 aatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 89  Q
    |||||||||||||| |||||||| |||||||| |||| ||||||||||| ||||| ||||||||||||||||||||    
T  29658792 aatacttgagagatcaaaacatcatattgtttgcttccattttccccaacttggaagtgcttgatttgagctattg 29658867  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 29691307 - 29691382
Alignment:
Q  14 aatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 89  Q
    |||||||||||||| |||||||  |||||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  29691307 aatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagctattg 29691382  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 29718819 - 29718894
Alignment:
Q  14 aatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 89  Q
    |||||||||||||| |||||||  |||||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  29718819 aatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagctattg 29718894  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 33160773 - 33160702
Alignment:
Q  17 acttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctatt 88  Q
    |||||||||||||||||||| |||||||| |||  || ||||||||||||||||||||||||||||||||||    
T  33160773 acttgagagatgaaaacatcgtattgtttcctttcatgttccccaatttggaggtgcttgatttgagctatt 33160702  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 29659026 - 29659108
Alignment:
Q  95 atgtcacagagaagggagcgaatcatgtcgttcaaaaatgcacacaactcaaggagatcaatatgagatcttgtgatcaagtg 177  Q
    ||||||||||||| ||||  || ||||| |||||||| ||||| ||||| |  ||||||||| |||||| |||||||||||||    
T  29659026 atgtcacagagaatggagtaaaacatgtggttcaaaactgcacgcaactgactgagatcaatttgagatattgtgatcaagtg 29659108  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 19468340 - 19468397
Alignment:
Q  25 gatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttga 82  Q
    |||||||||||| || ||||| |||| ||||| ||||||||| || ||||||||||||    
T  19468340 gatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttga 19468397  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 9581332 - 9581276
Alignment:
Q  22 agagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgat 78  Q
    |||||| |||||||| || ||||| |||| ||||||||||||||| || ||||||||    
T  9581332 agagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat 9581276  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 9586900 - 9586844
Alignment:
Q  22 agagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgat 78  Q
    |||||| |||||||| || ||||| |||| ||||||||||||||| || ||||||||    
T  9586900 agagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat 9586844  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 29719053 - 29719121
Alignment:
Q  95 atgtcacagagaagggagcgaatcatgtcgttcaaaaatgcacacaactcaaggagatcaatatgagat 163  Q
    ||||||||||||| |||| ||| ||||| |||||||| ||||  ||||| | |||||||||| ||||||    
T  29719053 atgtcacagagaatggagtgaaacatgtggttcaaaactgcaagcaactgagggagatcaatttgagat 29719121  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 6594439 - 6594505
Alignment:
Q  17 acttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgag 83  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||    
T  6594439 acttgaaagatgaaaacatcatattgtttgcttctattttccccactttggagctgcttgatttgag 6594505  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 10634273 - 10634341
Alignment:
Q  23 gagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattgta 91  Q
    |||||||| ||||| | ||||||||||| ||||| ||||| ||||| ||||| |||||||| |||||||    
T  10634273 gagatgaacacatcatgttgtttacttccatttttcccaacttggacgtgctggatttgagttattgta 10634341  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 55908567 - 55908626
Alignment:
Q  26 atgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagct 85  Q
    ||||||||||| |||||||| |||| ||||||||||||||| |  | |||||||||||||    
T  55908567 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagct 55908626  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 570606 - 570542
Alignment:
Q  25 gatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 89  Q
    |||||||||||  || ||||| |||||||||||||||||||| || | |||||||| || |||||    
T  570606 gatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattg 570542  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 1037503 - 1037562
Alignment:
Q  26 atgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagct 85  Q
    ||||||||||| |||||||| |||| ||||||||||||||| |  | |||||||||||||    
T  1037503 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagct 1037562  T

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