View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5165_low_60 (Length: 218)
Name: NF5165_low_60
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_low_60 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 2486769 - 2486584
Alignment:
| Q |
16 |
attatactacataagatgatctaaaatgaacattattttgaaattttaaaacattaaaaactatataattatcaggaactcatttcatacattttcccag |
115 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2486769 |
attatactacataagatgaactcaaatgaacattattttgaaattttaaaacattaaaaactatataattatcaggaactcatttcatacattttcccag |
2486670 |
T |
|
| Q |
116 |
atattattaattcttgatatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2486669 |
atattattaattcttgatatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatg |
2486584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 2471135 - 2471069
Alignment:
| Q |
129 |
ttgatatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaa |
195 |
Q |
| |
|
||||| ||| |||||||||| |||||||| ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
2471135 |
ttgatctgagtcacttagtacggtaattgaccagcaatgttaccaggtgggtcataattgcaagtaa |
2471069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 2478950 - 2478898
Alignment:
| Q |
150 |
ggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgt |
202 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
2478950 |
ggtaattggccaggaatgttacctgggggataataattacaagtaacaaatgt |
2478898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 2483454 - 2483402
Alignment:
| Q |
150 |
ggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgt |
202 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
2483454 |
ggtaattggccaggaatattacctgggggataataattacaagtaacaaatgt |
2483402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University