View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5165_low_9 (Length: 440)
Name: NF5165_low_9
Description: NF5165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5165_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 22 - 375
Target Start/End: Original strand, 7187938 - 7188300
Alignment:
| Q |
22 |
caatatttcataaataatataataaagtgatgccatcataaaatcctattagatgtttattttgacaagaaaatcttattagatgttgtggtctaaaata |
121 |
Q |
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| T |
7187938 |
caatatttcataaataatataataaagttttgtcatcataaaatcctattggatgtttattttgacaagaaaatcttattagatgttgtggtctaaaata |
7188037 |
T |
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| Q |
122 |
aaccggaggtgagtcgaatcaaacaatggaaa-ggccaaagg-------acttctttccnnnnnnnnnn-ggtagggatacttggtggtttaaaatgaac |
212 |
Q |
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| T |
7188038 |
aaccggaggtgagtcgaatcaaacaatggaaaaggccaaaggtaggtgtacttctttccaaaaaaaaaaaggtagggatacttggtggtttaaaatgaac |
7188137 |
T |
|
| Q |
213 |
ataagttaatggtggaggatatgacacaaaagaacccctcatggccttcaactttggatctattcagtttcatattttatgttattgttaacaaatcgat |
312 |
Q |
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| T |
7188138 |
ataagttaatggtggaggatatgacacaaaagaacccctcatggccttcaactttggatctattcagtttcatattttatgttattgttaacaaatcgat |
7188237 |
T |
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| Q |
313 |
aacattttatctataaacaagtgatatttgtacgattattttgtgataacttttagacaattt |
375 |
Q |
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| T |
7188238 |
aacattttacctataaacaagtgatatttgtacgattattttgtgataatttttagacaattt |
7188300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 38019569 - 38019531
Alignment:
| Q |
334 |
tgatatttgtacgattattttgtgataacttttagacaa |
372 |
Q |
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| T |
38019569 |
tgatatttgtataattattttgtgataacttttagacaa |
38019531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Complemental strand, 45350160 - 45350119
Alignment:
| Q |
334 |
tgatatttgtacgattattttgtgataacttttagacaattt |
375 |
Q |
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| T |
45350160 |
tgatatttgtacaattattttgtgataatttttagataattt |
45350119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 49167920 - 49167882
Alignment:
| Q |
334 |
tgatatttgtacgattattttgtgataacttttagacaa |
372 |
Q |
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| T |
49167920 |
tgatatttgtacaattattttgtgataatttttagacaa |
49167882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 23094382 - 23094420
Alignment:
| Q |
334 |
tgatatttgtacgattattttgtgataacttttagacaa |
372 |
Q |
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| T |
23094382 |
tgatatttgtacaatcattttgtgataacttttagacaa |
23094420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 372
Target Start/End: Original strand, 35987251 - 35987292
Alignment:
| Q |
331 |
aagtgatatttgtacgattattttgtgataacttttagacaa |
372 |
Q |
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||||||||||||||| | ||||||||||||||||||| |||| |
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| T |
35987251 |
aagtgatatttgtacaactattttgtgataacttttaaacaa |
35987292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Complemental strand, 40419707 - 40419666
Alignment:
| Q |
334 |
tgatatttgtacgattattttgtgataacttttagacaattt |
375 |
Q |
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| T |
40419707 |
tgatatttgtacaatcattttgtgataatttttagacaattt |
40419666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 3091747 - 3091788
Alignment:
| Q |
334 |
tgatatttgtacgattattttgtgataacttttagacaattt |
375 |
Q |
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|||||||||||| | |||||||||||||||||| |||||||| |
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| T |
3091747 |
tgatatttgtacaactattttgtgataactttttgacaattt |
3091788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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