View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166-Insertion-1 (Length: 906)
Name: NF5166-Insertion-1
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166-Insertion-1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 821; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 821; E-Value: 0
Query Start/End: Original strand, 8 - 906
Target Start/End: Original strand, 27860588 - 27861489
Alignment:
| Q |
8 |
ccttgtccctcttgaccatatcttctgcattcccatggtcagcagtgactacataaattccacccacttgctcaattgcgtcaagaatcatctgcaatta |
107 |
Q |
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| T |
27860588 |
ccttgtccctcttgaccatatcttctgcattcccatggtcagcagtgactacataaattccacccacttgctcaattgcgtcaagaatcatctgcaatta |
27860687 |
T |
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| Q |
108 |
catttataaatacacagtattattacaaggagtatagccttcacttacaaggcaataacacataatgaaaggattgtgctatatatttaaacacagcact |
207 |
Q |
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| T |
27860688 |
catttataaatacacagtattattacaaggagtatagccttcacttacaaggcaataacacataatgaaaggattgtgctatatatttaaacacagcact |
27860787 |
T |
|
| Q |
208 |
gctttttactcttaatttcataacataatataatgacaacgaaaaatttcaaattttcagctagagctcaaaaaacataacaaaagatatatttccagaa |
307 |
Q |
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| T |
27860788 |
gctttttactcttaatttcataacataatataatgacaacgaaaaatttcaaattttcagctagagctcaaaaaacataacaaaagatatatttccagaa |
27860887 |
T |
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| Q |
308 |
aatttcaaaaattaagtttgtacctttacagctttgtcggctgccttacaagccacaactgttgcttcaatgtcacctgtatgccccaccatgtcaccgt |
407 |
Q |
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| T |
27860888 |
aatttcaaaaattaagttcgtacctttacagctttgtcggctgccttacaagccacaactgttgcttcaatgtcacctgtatgccccaccatgtcaccat |
27860987 |
T |
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| Q |
408 |
ttggaatgttgacacgtacctacacaacagnnnnnnn-taagatagttaactaaaagtttatcattagacaatcaatctaaaaaccacccaataatccat |
506 |
Q |
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| T |
27860988 |
ttggtatgttgacacgtatctacacaacagaaaaaaaataagatagttaactaaaagtttatcattagacaatcaatctaaaaaccacccaataatccat |
27861087 |
T |
|
| Q |
507 |
ttacttacctgatcaaatttaccgctaagaattgcgtcccttgccttctcgccaatctccaaagccttcattaatggctgctcgttgaatgttatgccag |
606 |
Q |
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| T |
27861088 |
ttacttacctgatcaaatttaccgctaagaattgcatcccttgccttctcgccaatctccaaagccttcattaatggctgctcattgaatgttatgccag |
27861187 |
T |
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| Q |
607 |
agtcacttggaatctcaacatattcctccagtttctcatcaaaatatccagaccggttcccattccagaaaaatgtgacatgaccaaacttaacagtctc |
706 |
Q |
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| T |
27861188 |
agtcacttggaatctcaacatattcctccagtttctcatcaaaatatccagaccggttcccattccagaaaaatgtgacatgaccaaacttaacagtctc |
27861287 |
T |
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| Q |
707 |
actgttgaagaagaaatacattagtgactttgataactatcatttaaaagcaatca-tttagataatgcaaagcgcccaaggtaaaaactacagtcaaga |
805 |
Q |
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| T |
27861288 |
actgttgaagaagaaatacattagtgactttgataactatcatttaaaagcaatcattttagataatgcaaagcgcccaaggtaaaaactacagtcaaga |
27861387 |
T |
|
| Q |
806 |
tagtagttaacataaaggatatgatgaaattttatgattac-aaattttcaccatcaactatggaatggttatttagcaagataagtgattcgcatgaaa |
904 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| |
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| T |
27861388 |
tagtagttaacataaaggatatgatgaaattttatgattacaaaattttcaccatcaactatagaatgatcatttagcaagataagtgattcgcatgaaa |
27861487 |
T |
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| Q |
905 |
ct |
906 |
Q |
| |
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|| |
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| T |
27861488 |
ct |
27861489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 35454555 - 35454440
Alignment:
| Q |
13 |
tccctcttgaccatatcttctgcattcccatggtcagcagtgactacataaattccacccacttgctcaattgcgtcaagaatcatctgcaattacattt |
112 |
Q |
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| T |
35454555 |
tccctgttgaccatatcttttgcattcccatggtcagcagtgactagataaattccacccactagctcaattgcatcaagaaaaatctgcaattacatat |
35454456 |
T |
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| Q |
113 |
ataaatacacagtatt |
128 |
Q |
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|||||||||||||||| |
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| T |
35454455 |
ataaatacacagtatt |
35454440 |
T |
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Back To:
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