View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5166-Insertion-11 (Length: 292)

Name: NF5166-Insertion-11
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5166-Insertion-11
NF5166-Insertion-11
[»] chr2 (11 HSPs)
chr2 (8-130)||(5573282-5573404)
chr2 (8-89)||(5576362-5576443)
chr2 (8-83)||(5586783-5586858)
chr2 (8-78)||(5593019-5593089)
chr2 (8-83)||(5582532-5582606)
chr2 (138-200)||(5587107-5587169)
chr2 (8-81)||(12059434-12059507)
chr2 (138-200)||(5573576-5573638)
chr2 (8-66)||(12064819-12064877)
chr2 (145-202)||(5582858-5582915)
chr2 (145-202)||(5593350-5593407)


Alignment Details
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 5573282 - 5573404
Alignment:
Q  8 agtatgtctgagccattaatgtttgcaaatggtggaatgaattcctcaaaaccaagaagctgagctgcaatcaaaaggacttcagcttgagcttaactaa 107  Q
    ||||||||||| ||| | ||||||||||||||||||||||| | |||||| |||||||| |||||||||||||||||||||| || |||||||||| |||    
T  5573282 agtatgtctgaaccactgatgtttgcaaatggtggaatgaaattctcaaatccaagaagttgagctgcaatcaaaaggacttgagtttgagcttaattaa 5573381  T
Q  108 aaagagggattaaatttcataat 130  Q
    |||||| |||||||||| |||||    
T  5573382 aaagagagattaaatttgataat 5573404  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 5576362 - 5576443
Alignment:
Q  8 agtatgtctgagccattaatgtttgcaaatggtggaatgaattcctcaaaaccaagaagctgagctgcaatcaaaaggactt 89  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  5576362 agtatgtctgaaccattaatgtttgcaaagggtggaatgaatttctcaaaaccaagaagctgagctgcaataaaaagaactt 5576443  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 5586783 - 5586858
Alignment:
Q  8 agtatgtctgagccattaatgtttgcaaatggtggaatgaattcctcaaaaccaagaagctgagctgcaatcaaaa 83  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |||||||||    
T  5586783 agtatgtctgagccattaatgtttgcaaatggtggaatgaagttctcaaagccaagaagctgagctacaatcaaaa 5586858  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 5593019 - 5593089
Alignment:
Q  8 agtatgtctgagccattaatgtttgcaaatggtggaatgaattcctcaaaaccaagaagctgagctgcaat 78  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||    
T  5593019 agtatgtctgaaccattaatgttcgcaaatggtggaatgaatttctcaaaaccaagtaactgagctgcaat 5593089  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 5582532 - 5582606
Alignment:
Q  8 agtatgtctgagccattaatgtttgcaaatggtggaatgaattcctcaaaaccaagaagctgagctgcaatcaaaa 83  Q
    ||||||||||| ||| ||||||||||||||||| ||||||| | ||||||| ||||||||||||||||||| ||||    
T  5582532 agtatgtctgaaccactaatgtttgcaaatggtagaatgaagttctcaaaa-caagaagctgagctgcaataaaaa 5582606  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 5587107 - 5587169
Alignment:
Q  138 taaatacacaaggcacctgggatttcccattgacacattgttgcaaataatttccagacaaga 200  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||| ||| |||| ||||    
T  5587107 taaatagacaaggcacttgggatttcccattgacacattgttgcaaatagtttgcagaaaaga 5587169  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 12059507 - 12059434
Alignment:
Q  8 agtatgtctgagccattaatgtttgcaaatggtggaatgaattcctcaaaaccaagaagctgagctgcaatcaa 81  Q
    ||||||||||| |||||| |||||||||||| ||||||||||| || ||| |||| ||| ||||||||||||||    
T  12059507 agtatgtctgaaccattagtgtttgcaaatgatggaatgaatttctaaaatccaacaaggtgagctgcaatcaa 12059434  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 5573576 - 5573638
Alignment:
Q  138 taaatacacaaggcacctgggatttcccattgacacattgttgcaaataatttccagacaaga 200  Q
    |||||||||||||||| || ||||||||||||||||||||||  ||||| ||| |||||||||    
T  5573576 taaatacacaaggcacttgagatttcccattgacacattgtttaaaatagtttgcagacaaga 5573638  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 12064877 - 12064819
Alignment:
Q  8 agtatgtctgagccattaatgtttgcaaatggtggaatgaattcctcaaaaccaagaag 66  Q
    ||||||||||| |||||| |||||||||||| ||||||||||| || ||| ||||||||    
T  12064877 agtatgtctgaaccattagtgtttgcaaatgatggaatgaatttctaaaatccaagaag 12064819  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 5582858 - 5582915
Alignment:
Q  145 acaaggcacctgggatttcccattgacacattgttgcaaataatttccagacaagaga 202  Q
    |||||| || |||||||||||||||||| |||| |||||||| ||| |||||||||||    
T  5582858 acaaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaagaga 5582915  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 5593350 - 5593407
Alignment:
Q  145 acaaggcacctgggatttcccattgacacattgttgcaaataatttccagacaagaga 202  Q
    |||||| || |||||||||||||||||| |||| |||||||| ||| |||||||||||    
T  5593350 acaaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaagaga 5593407  T

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