View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5166-Insertion-2 (Length: 883)

Name: NF5166-Insertion-2
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5166-Insertion-2
NF5166-Insertion-2
[»] chr2 (35 HSPs)
chr2 (8-883)||(5699216-5700095)
chr2 (8-99)||(5687011-5687102)
chr2 (715-829)||(12324430-12324544)
chr2 (719-804)||(8485881-8485966)
chr2 (715-832)||(31380499-31380618)
chr2 (486-572)||(28770878-28770964)
chr2 (484-541)||(2869829-2869886)
chr2 (484-541)||(3277908-3277965)
chr2 (399-442)||(12123434-12123477)
chr2 (495-541)||(8390284-8390330)
chr2 (399-437)||(11151438-11151476)
chr2 (484-541)||(23078606-23078663)
chr2 (470-541)||(14699129-14699198)
chr2 (497-541)||(17865121-17865165)
chr2 (399-439)||(29868154-29868194)
chr2 (399-439)||(39285120-39285160)
chr2 (385-443)||(4561352-4561411)
chr2 (399-437)||(723589-723627)
chr2 (399-437)||(5723098-5723136)
chr2 (399-437)||(6594846-6594884)
chr2 (495-541)||(8039976-8040022)
chr2 (399-437)||(11067588-11067626)
chr2 (715-769)||(11183882-11183936)
chr2 (495-541)||(20522136-20522182)
chr2 (495-541)||(31055958-31056004)
chr2 (495-541)||(33528756-33528802)
chr2 (399-437)||(34139615-34139653)
chr2 (495-529)||(34388775-34388809)
chr2 (399-437)||(38312528-38312566)
chr2 (399-437)||(45100042-45100080)
chr2 (484-541)||(10445579-10445636)
chr2 (488-529)||(12632466-12632507)
chr2 (399-440)||(13122044-13122085)
chr2 (399-436)||(33162296-33162333)
chr2 (394-435)||(36191098-36191139)
[»] chr5 (13 HSPs)
chr5 (715-832)||(34272244-34272361)
chr5 (715-832)||(15027014-15027130)
chr5 (458-528)||(30899742-30899810)
chr5 (495-541)||(3880216-3880262)
chr5 (495-541)||(12084311-12084357)
chr5 (459-541)||(2630110-2630193)
chr5 (495-529)||(14520145-14520179)
chr5 (495-541)||(19588662-19588708)
chr5 (399-437)||(30682765-30682803)
chr5 (399-437)||(39468391-39468429)
chr5 (399-437)||(42428273-42428311)
chr5 (565-648)||(30793237-30793324)
chr5 (484-529)||(34842509-34842554)
[»] chr6 (18 HSPs)
chr6 (713-829)||(6919321-6919437)
chr6 (722-833)||(29181491-29181602)
chr6 (484-541)||(22963605-22963662)
chr6 (484-541)||(23824731-23824788)
chr6 (495-541)||(5017603-5017649)
chr6 (739-812)||(8171134-8171206)
chr6 (715-796)||(10086065-10086146)
chr6 (497-541)||(18232763-18232807)
chr6 (727-783)||(30062991-30063047)
chr6 (362-440)||(4045693-4045772)
chr6 (495-541)||(4629869-4629915)
chr6 (399-437)||(5408912-5408950)
chr6 (399-437)||(5413237-5413275)
chr6 (399-437)||(9182873-9182911)
chr6 (495-541)||(10077300-10077346)
chr6 (401-439)||(28137255-28137293)
chr6 (379-429)||(30519238-30519287)
chr6 (399-437)||(31404517-31404555)
[»] chr7 (25 HSPs)
chr7 (716-832)||(32471262-32471378)
chr7 (715-812)||(39773170-39773267)
chr7 (715-832)||(29367426-29367543)
chr7 (399-437)||(29991341-29991379)
chr7 (399-439)||(31105242-31105282)
chr7 (375-441)||(30843302-30843369)
chr7 (495-541)||(55864-55910)
chr7 (495-541)||(4796802-4796848)
chr7 (403-437)||(8153625-8153659)
chr7 (399-437)||(18126934-18126972)
chr7 (495-541)||(20284005-20284051)
chr7 (399-441)||(23344249-23344291)
chr7 (399-437)||(23555329-23555367)
chr7 (402-436)||(24525351-24525385)
chr7 (399-437)||(25766799-25766837)
chr7 (495-541)||(29159719-29159765)
chr7 (399-437)||(35854204-35854242)
chr7 (399-437)||(47675979-47676017)
chr7 (399-437)||(48489719-48489757)
chr7 (495-541)||(49091578-49091624)
chr7 (402-439)||(495833-495870)
chr7 (484-541)||(2647831-2647888)
chr7 (372-441)||(23564884-23564953)
chr7 (399-436)||(36146254-36146291)
chr7 (484-541)||(46516445-46516502)
[»] chr8 (21 HSPs)
chr8 (714-832)||(32848074-32848192)
chr8 (715-829)||(9617997-9618111)
chr8 (715-811)||(17011727-17011821)
chr8 (715-811)||(17545380-17545474)
chr8 (717-831)||(39721287-39721403)
chr8 (484-538)||(5990699-5990753)
chr8 (362-442)||(32901992-32902073)
chr8 (399-439)||(1292311-1292351)
chr8 (399-439)||(12702473-12702513)
chr8 (399-439)||(19491545-19491585)
chr8 (399-439)||(41366460-41366500)
chr8 (484-527)||(7493210-7493253)
chr8 (399-441)||(8154064-8154106)
chr8 (399-437)||(15213074-15213112)
chr8 (495-541)||(26403365-26403411)
chr8 (399-437)||(30143628-30143666)
chr8 (399-437)||(34254173-34254211)
chr8 (402-439)||(1345221-1345258)
chr8 (399-436)||(5689556-5689593)
chr8 (362-442)||(11711808-11711889)
chr8 (402-439)||(40321361-40321398)
[»] chr4 (21 HSPs)
chr4 (710-833)||(45610535-45610659)
chr4 (487-541)||(37781771-37781825)
chr4 (753-832)||(5842125-5842204)
chr4 (742-828)||(5198896-5198982)
chr4 (470-541)||(5269326-5269394)
chr4 (491-541)||(10047291-10047341)
chr4 (497-539)||(16630817-16630859)
chr4 (495-541)||(38152573-38152619)
chr4 (715-783)||(23406518-23406586)
chr4 (399-439)||(48893485-48893525)
chr4 (742-828)||(4848723-4848810)
chr4 (400-442)||(5207693-5207735)
chr4 (399-437)||(5369924-5369962)
chr4 (399-437)||(5872105-5872143)
chr4 (495-541)||(25862157-25862203)
chr4 (399-437)||(29999671-29999709)
chr4 (399-437)||(37740913-37740951)
chr4 (399-437)||(46147238-46147276)
chr4 (399-437)||(48143336-48143374)
chr4 (399-437)||(56178478-56178516)
chr4 (488-541)||(42599709-42599762)
[»] chr1 (27 HSPs)
chr1 (715-800)||(29274471-29274555)
chr1 (362-441)||(37282501-37282581)
chr1 (484-541)||(47704071-47704128)
chr1 (399-439)||(23555113-23555153)
chr1 (718-773)||(32897267-32897322)
chr1 (400-437)||(10925510-10925547)
chr1 (484-541)||(29651716-29651773)
chr1 (399-439)||(834012-834052)
chr1 (399-439)||(41361196-41361236)
chr1 (491-527)||(48382631-48382667)
chr1 (399-439)||(50167022-50167062)
chr1 (715-778)||(12900713-12900776)
chr1 (398-437)||(13316193-13316232)
chr1 (717-815)||(13399978-13400079)
chr1 (495-541)||(775588-775634)
chr1 (399-437)||(3157153-3157191)
chr1 (399-437)||(8550626-8550664)
chr1 (495-541)||(13598314-13598360)
chr1 (385-439)||(15820582-15820636)
chr1 (495-541)||(27104507-27104553)
chr1 (377-431)||(44649992-44650046)
chr1 (751-833)||(49138095-49138177)
chr1 (399-437)||(49918638-49918676)
chr1 (754-783)||(4625300-4625329)
chr1 (398-439)||(13659192-13659233)
chr1 (484-541)||(40816867-40816924)
chr1 (399-436)||(45644200-45644237)
[»] chr3 (22 HSPs)
chr3 (362-440)||(27305522-27305600)
chr3 (715-832)||(46505886-46506003)
chr3 (715-780)||(14594845-14594910)
chr3 (495-541)||(8370612-8370658)
chr3 (495-541)||(27026861-27026907)
chr3 (399-439)||(22834849-22834889)
chr3 (495-538)||(35925398-35925441)
chr3 (404-439)||(44700331-44700366)
chr3 (495-538)||(48438130-48438173)
chr3 (399-441)||(2074924-2074966)
chr3 (399-437)||(7762554-7762592)
chr3 (399-437)||(9635966-9636004)
chr3 (495-541)||(26298904-26298950)
chr3 (499-541)||(27038210-27038252)
chr3 (399-437)||(29813349-29813387)
chr3 (495-541)||(40592908-40592954)
chr3 (399-437)||(40734785-40734823)
chr3 (399-437)||(40735670-40735708)
chr3 (495-529)||(47924009-47924043)
chr3 (398-439)||(16499300-16499341)
chr3 (399-436)||(29196232-29196269)
chr3 (394-442)||(40519107-40519156)
[»] scaffold0012 (1 HSPs)
scaffold0012 (715-780)||(41910-41975)
[»] scaffold0148 (1 HSPs)
scaffold0148 (484-541)||(10634-10691)
[»] scaffold0076 (1 HSPs)
scaffold0076 (484-541)||(16124-16181)
[»] scaffold1668 (1 HSPs)
scaffold1668 (399-437)||(1344-1382)
[»] scaffold0006 (3 HSPs)
scaffold0006 (495-541)||(2408-2454)
scaffold0006 (495-541)||(5599-5645)
scaffold0006 (398-439)||(148953-148994)


Alignment Details
Target: chr2 (Bit Score: 739; Significance: 0; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 8 - 883
Target Start/End: Original strand, 5699216 - 5700095
Alignment:
Q  8 atttggaccgacaaatatcatgttgtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttcttacgttaatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5699216 atttggaccgacaaatatcatgttgtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttcttacgttaatt 5699315  T
Q  108 aatttactagtgtttgtttgtcctaaaggacaaactattggagattatttgagagagtgagagataggatcacaataaataaatagataggataaatatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5699316 aatttactagtgtttgtttgtcctaaaggacaaactattggagattatttgagagagtgagagataggatcacaataaatagatagataggataaatatt 5699415  T
Q  208 attagaaatcatggtaggaccagataatatgttcaatatgtgaaagtaatgatattatttgataatcgatttcatgcattatttgagctatctttgatga 307  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5699416 attagaaatcatggtaggaccagataatgtgttcaatatgtgaaagtaatgatattatttgataattgatttcatgcattatttgagctatctttgatga 5699515  T
Q  308 aggaatgataatagttttagttttttgtcgatttggataatggaggtgtttaggtgtgtatttggactcaaaatcataccaatattcttaaatgtgtgga 407  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||    
T  5699516 aggaatgataatagttttagtttta-gtcgatttggataatggaggtgtttaggtgtgtatttggactcaaaatcatatcaataattttaaatgtttgga 5699614  T
Q  408 gcaaagaaaagtagtaatcaatatcaaagtaacctttgtcnnnnnnntatcaaagtaaccttaagcaacaacaagtcaacaacaaatagacctagatcta 507  Q
    |||||||||| ||||||||||||| |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5699615 gcaaagaaaaatagtaatcaatattaaagtaacctttgtcaaaaaaatatcaaagtaaccttaagcaacaacaagtcaacaacaaatagacctagatcta 5699714  T
Q  508 agtgtaaagcaacaccacaagcttattcaaagcagcaaccataagatagaagagaaaagaaacaaacacacaagaaatattttcttgatttggtccaaca 607  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5699715 agtgtaaagcaacaccacaagcttattcaaagcagcaacgataagataaaagagaaaagaaacaaacacacaagaaatattttcttgattcggtccaaca 5699814  T
Q  608 ataacatactctggggagagatctctccacttcactatcaacgagatacaaaaagattacaagaaactaatttcaacaagcaacaaaccctaatttctac 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  5699815 ataacatactctggggagagatctctccacttcactatcaacgagatacaaaaagattacaagaaattaatttcaacaaacaacaaaccctaatttctac 5699914  T
Q  708 catcttttgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaa 807  Q
    ||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  5699915 cattttcagttatgattcaaaatagcatattaggaaatacacttggcataacataattggttaaggtaaatgaacacgtgactagtgatcctaaaatcaa 5700014  T
Q  808 ggaagtttgggttgtgcataaataggccaatgagaatca----aaggtatgaag-aaaatgattgaagtctctcctctctc 883  Q
    ||||||||||| |||||||||||||||||||||||||||    ||||||||||| ||||||||||||||||||||||||||    
T  5700015 ggaagtttgggctgtgcataaataggccaatgagaatcaacagaaggtatgaagaaaaatgattgaagtctctcctctctc 5700095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 5687011 - 5687102
Alignment:
Q  8 atttggaccgacaaatatcatgttgtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttctta 99  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5687011 atttggaccgacaattatcatgttgtaagaagtccaattgcagtgtcttttcaatgaaaaaacattatagtattcttgtactcattttctta 5687102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 715 - 829
Target Start/End: Original strand, 12324430 - 12324544
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaagtt 814  Q
    ||||||||||||||||||||||| |||||||||| ||| | |||||||||| ||||||||||||||| || || |  |||||| |||||||||| ||  |    
T  12324430 tgttatgattcaaaatagcatatgaggaaatacatttgacctaacataattagttgaggtaaatggagacgtggcgtgtgatcttaaaatcaagtaacct 12324529  T
Q  815 tgggttgtgcataaa 829  Q
    || ||||||||||||    
T  12324530 tgagttgtgcataaa 12324544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 719 - 804
Target Start/End: Complemental strand, 8485966 - 8485881
Alignment:
Q  719 atgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaat 804  Q
    |||||||| |||||||| | |||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||| || ||||||    
T  8485966 atgattcagaatagcatttgaggatatacatttggcataacataattgattgaggtaaatggacacatgactagtggtcttaaaat 8485881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 715 - 832
Target Start/End: Original strand, 31380499 - 31380618
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataatt--ggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaag 812  Q
    |||||||||||||| ||||||||  |||||||||||| |||||||||||||  ||||||  ||||||||||| || ||| | ||||||||||||| |||     
T  31380499 tgttatgattcaaagtagcatatgtggaaatacacttagcataacataattggggttgatataaatggacacgtggctaatcatcctaaaatcaatgaac 31380598  T
Q  813 tttgggttgtgcataaatag 832  Q
     ||| |||||||||||||||    
T  31380599 cttgagttgtgcataaatag 31380618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 486 - 572
Target Start/End: Complemental strand, 28770964 - 28770878
Alignment:
Q  486 acaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagcagcaaccataagatagaagagaaaagaaacaa 572  Q
    ||||||||||||||||||||||||||| |||||||||||||||| || ||||||||  ||  |||| | |||||||||| |||||||    
T  28770964 acaacaaatagacctagatctaagtgtgaagcaacaccacaagcataatcaaagcaaaaaatataataaagaagagaaaggaaacaa 28770878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 484 - 541
Target Start/End: Complemental strand, 2869886 - 2869829
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||| |||||||||||    
T  2869886 caacaacaaatagacctaaatctaagtgtagagcaacaccataagcatattcaaagca 2869829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 484 - 541
Target Start/End: Original strand, 3277908 - 3277965
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||||||||||| |||||||||||||| ||||||||| |||| | |||||||||||    
T  3277908 caacaacaaatagatctagatctaagtgtgaagcaacactacaaacatattcaaagca 3277965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 399 - 442
Target Start/End: Original strand, 12123434 - 12123477
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaacct 442  Q
    ||||||||||||||| |||||||||| |||||||||||||||||    
T  12123434 atgtgtggagcaaaggaaagtagtaaccaatatcaaagtaacct 12123477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 541
Target Start/End: Complemental strand, 8390330 - 8390284
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  8390330 agacctagatctaagtgtagagcaacaccacaagcataatcaaagca 8390284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 11151438 - 11151476
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  11151438 atgtgtggagcaaataaaagtagtaatcaatatcaaagt 11151476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 541
Target Start/End: Complemental strand, 23078663 - 23078606
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||| ||| | ||||||||||||||||| ||||||||||||||| || ||||||||    
T  23078663 caacaaaaaacatacctagatctaagtgtagagcaacaccacaagcataatcaaagca 23078606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 470 - 541
Target Start/End: Complemental strand, 14699198 - 14699129
Alignment:
Q  470 aagcaacaacaagtcaacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||||||||  |||||| ||  ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  14699198 aagcaacaacaa--caacaaaaagcagacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 14699129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 497 - 541
Target Start/End: Original strand, 17865121 - 17865165
Alignment:
Q  497 acctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||    
T  17865121 acctagatctaagtgtagagcaacaccacaagcataatcaaagca 17865165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 29868194 - 29868154
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  29868194 atgtgtggagcaaagaaaagtagtaatcaattttaaagtaa 29868154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 39285160 - 39285120
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  39285160 atgtgtggagcaaagaaaagtagtaaccaatttcaaagtaa 39285120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 443
Target Start/End: Complemental strand, 4561411 - 4561352
Alignment:
Q  385 accaatattcttaaatgtgtggagcaaa-gaaaagtagtaatcaatatcaaagtaacctt 443  Q
    |||||||  |||| ||||||||| |||| |||||||||||| ||||||||||||||||||    
T  4561411 accaataaacttagatgtgtggaacaaaagaaaagtagtaaccaatatcaaagtaacctt 4561352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 723589 - 723627
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  723589 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 723627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 5723098 - 5723136
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  5723098 atgtgtggagcaaagtaaagtagtaaccaatatcaaagt 5723136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 6594846 - 6594884
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  6594846 atgtgtggagcaaagtaaagtagtaaccaatatcaaagt 6594884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 8039976 - 8040022
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  8039976 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 8040022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 11067626 - 11067588
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  11067626 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 11067588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 715 - 769
Target Start/End: Original strand, 11183882 - 11183936
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggtt 769  Q
    ||||||||||| ||||||||||| || |||||||||||||| ||  |||||||||    
T  11183882 tgttatgattctaaatagcatatgagaaaatacacttggcaaaatgtaattggtt 11183936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 20522136 - 20522182
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||| |||||||||||||| ||||||||||||||| || ||||||||    
T  20522136 agacatagatctaagtgtagagcaacaccacaagcataatcaaagca 20522182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 31055958 - 31056004
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  31055958 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 31056004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Complemental strand, 33528802 - 33528756
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||||||||||| |||| ||||||||||||||| || ||||||||    
T  33528802 agacctagatctaaatgtagagcaacaccacaagcataatcaaagca 33528756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 34139615 - 34139653
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  34139615 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 34139653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 529
Target Start/End: Original strand, 34388775 - 34388809
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagc 529  Q
    ||||||||||||||||||| |||||||||||||||    
T  34388775 agacctagatctaagtgtagagcaacaccacaagc 34388809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 38312566 - 38312528
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  38312566 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 38312528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 45100080 - 45100042
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  45100080 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 45100042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 541
Target Start/End: Complemental strand, 10445636 - 10445579
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||| ||| ||||||| ||||||||||| ||||| ||||||||| || ||||||||    
T  10445636 caacaaaaaacagacctaaatctaagtgtagagcaaaaccacaagcataatcaaagca 10445579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 488 - 529
Target Start/End: Original strand, 12632466 - 12632507
Alignment:
Q  488 aacaaatagacctagatctaagtgtaaagcaacaccacaagc 529  Q
    |||||| |||||||||| ||||||| ||||||||||||||||    
T  12632466 aacaaacagacctagatataagtgtcaagcaacaccacaagc 12632507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 13122085 - 13122044
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaac 440  Q
    |||||||||| ||||||||||| |||||||||||||| ||||    
T  13122085 atgtgtggagtaaagaaaagtactaatcaatatcaaaataac 13122044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 436
Target Start/End: Original strand, 33162296 - 33162333
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaag 436  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  33162296 atgtgtggagcaaaggaaagtagtaaccaatatcaaag 33162333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 36191098 - 36191139
Alignment:
Q  394 cttaaatgtgtggagcaaagaaaagtagtaatcaatatcaaa 435  Q
    ||||||||||||||||||||||||  ||||| ||||||||||    
T  36191098 cttaaatgtgtggagcaaagaaaatcagtaaccaatatcaaa 36191139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 7e-36; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 715 - 832
Target Start/End: Original strand, 34272244 - 34272361
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaagtt 814  Q
    ||||||||||||||||||||||| || ||||||| |||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| | |    
T  34272244 tgttatgattcaaaatagcatatgagaaaatacatttggcataacataattggtttaggtaaatggacatgtgactagtgatcctaaaatcaaggatgct 34272343  T
Q  815 tgggttgtgcataaatag 832  Q
    | | ||||||||||||||    
T  34272344 tagattgtgcataaatag 34272361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 715 - 832
Target Start/End: Complemental strand, 15027130 - 15027014
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaagtt 814  Q
    ||||||||| ||||||| || || || ||||||| ||||||||||||||||||||||||||||| |||||  | |||||||||||||||||||||||  |    
T  15027130 tgttatgatccaaaataacacatgagaaaatacatttggcataacataattggttgaggtaaat-gacactcggctagtgatcctaaaatcaaggaacct 15027032  T
Q  815 tgggttgtgcataaatag 832  Q
    |  |||||||||| ||||    
T  15027031 taagttgtgcatatatag 15027014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 458 - 528
Target Start/End: Original strand, 30899742 - 30899810
Alignment:
Q  458 caaagtaaccttaagcaacaacaagtcaacaacaaatagacctagatctaagtgtaaagcaacaccacaag 528  Q
    ||||||| ||| ||||||||||||  |||||||| ||||||||||||| |||||| |||||||||||||||    
T  30899742 caaagtagcctcaagcaacaacaa--caacaacacatagacctagatcaaagtgttaagcaacaccacaag 30899810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 3880216 - 3880262
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||| ||||||||||||||||||||||||||| || ||||||||    
T  3880216 agacctaaatctaagtgtaaagcaacaccacaagcataatcaaagca 3880262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 541
Target Start/End: Complemental strand, 12084357 - 12084311
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  12084357 agacctagatctaagtgtagagcaacaccacaagcataatcaaagca 12084311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 541
Target Start/End: Original strand, 2630110 - 2630193
Alignment:
Q  459 aaagtaaccttaagcaacaacaagt-caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||| ||| ||||||||||||   ||| ||||||||| |||| ||||||||| | ||||||||||||||| |||| ||||||    
T  2630110 aaagtagcctcaagcaacaacaacaacaaaaacaaataggcctaaatctaagtgcagagcaacaccacaagcatatttaaagca 2630193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 529
Target Start/End: Original strand, 14520145 - 14520179
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagc 529  Q
    ||||||||||||||||||| |||||||||||||||    
T  14520145 agacctagatctaagtgtagagcaacaccacaagc 14520179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 19588662 - 19588708
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  19588662 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 19588708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 30682765 - 30682803
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  30682765 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 30682803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 39468391 - 39468429
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  39468391 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 39468429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 42428273 - 42428311
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  42428273 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 42428311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 648
Target Start/End: Complemental strand, 30793324 - 30793237
Alignment:
Q  565 agaaacaaacacac-aagaaatattttcttgatttggtccaacaataacatactctgggg---agagatctctccacttcactatcaa 648  Q
    |||||||||||||| ||||||| ||| | |  || ||||||||||| || |||||| |||   |||||||||||||||||||||||||    
T  30793324 agaaacaaacacaccaagaaatgtttaccttgttcggtccaacaatgacttactctaggggagagagatctctccacttcactatcaa 30793237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 529
Target Start/End: Original strand, 34842509 - 34842554
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagc 529  Q
    |||||| ||| | |||||||||||||||| ||||||||||||||||    
T  34842509 caacaataaacaaacctagatctaagtgtgaagcaacaccacaagc 34842554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 2e-30; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 713 - 829
Target Start/End: Original strand, 6919321 - 6919437
Alignment:
Q  713 tttgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaag 812  Q
    ||||||||||||||| |||||||||  | |||||||||||||||||||||||||||||||| |||||||||  || |||||||| ||||||| ||| |||    
T  6919321 tttgttatgattcaatatagcatatgggaaaatacacttggcataacataattggttgaggcaaatggacatgtggctagtgatactaaaattaagaaag 6919420  T
Q  813 tttgggttgtgcataaa 829  Q
    ||||| |||||||||||    
T  6919421 tttggattgtgcataaa 6919437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 722 - 833
Target Start/End: Original strand, 29181491 - 29181602
Alignment:
Q  722 attcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaagtttgggttg 821  Q
    |||||||||||||||| | ||||||||||||||||  ||| | ||||||||| ||||| |||  || ||||||||||||||||||| |||||||||| |     
T  29181491 attcaaaatagcatatgaagaaatacacttggcatgtcattactggttgaggcaaatgaacaagtggctagtgatcctaaaatcaaagaagtttgggata 29181590  T
Q  822 tgcataaatagg 833  Q
    ||||||||||||    
T  29181591 tgcataaatagg 29181602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 484 - 541
Target Start/End: Original strand, 22963605 - 22963662
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  22963605 caacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagca 22963662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 484 - 541
Target Start/End: Complemental strand, 23824788 - 23824731
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  23824788 caacaaaaaacagacctagatctaagtgtagagcaacaccacaagcataatcaaagca 23824731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 541
Target Start/End: Complemental strand, 5017649 - 5017603
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  5017649 agacctagatctaagtgtagagcaacaccacaagcataatcaaagca 5017603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 739 - 812
Target Start/End: Original strand, 8171134 - 8171206
Alignment:
Q  739 aggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaag 812  Q
    |||||||||||||| |||||| ||||||||||| | |||| ||||  || |||||||| |||||||||||||||    
T  8171134 aggaaatacacttgtcataacttaattggttgaagcaaattgacatgtggctagtgat-ctaaaatcaaggaag 8171206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 715 - 796
Target Start/End: Original strand, 10086065 - 10086146
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgat 796  Q
    |||||||||||||||||||| || || |||||||| | | | || ||||||||||||| ||||||||||  || ||||||||    
T  10086065 tgttatgattcaaaatagcacatgagaaaatacacattgaaaaatataattggttgagataaatggacatgtggctagtgat 10086146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 497 - 541
Target Start/End: Original strand, 18232763 - 18232807
Alignment:
Q  497 acctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||    
T  18232763 acctagatctaagtgtagagcaacaccacaagcataatcaaagca 18232807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 727 - 783
Target Start/End: Original strand, 30062991 - 30063047
Alignment:
Q  727 aaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggaca 783  Q
    |||||||| || || |||||||||||||| ||  |||||||||||||||||||||||    
T  30062991 aaatagcacatgagaaaatacacttggcaaaatgtaattggttgaggtaaatggaca 30063047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 440
Target Start/End: Complemental strand, 4045772 - 4045693
Alignment:
Q  362 tgtgtatttggactcaaaat-cataccaatattcttaaatgtgtggagcaaagaaaagtagtaatcaatatcaaagtaac 440  Q
    |||| ||||||||||||||| || ||||||| ||||| ||||||| ||  ||  |||||||||| |||||||||||||||    
T  4045772 tgtgaatttggactcaaaattcacaccaataatcttatatgtgtgaagttaaagaaagtagtaaccaatatcaaagtaac 4045693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 4629869 - 4629915
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  4629869 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 4629915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 5408912 - 5408950
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  5408912 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 5408950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 5413237 - 5413275
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  5413237 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 5413275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 9182873 - 9182911
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  9182873 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 9182911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Complemental strand, 10077346 - 10077300
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  10077346 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 10077300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 401 - 439
Target Start/End: Original strand, 28137255 - 28137293
Alignment:
Q  401 gtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    ||||||||||||| |||||||||| ||||||||||||||    
T  28137255 gtgtggagcaaaggaaagtagtaaccaatatcaaagtaa 28137293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 379 - 429
Target Start/End: Complemental strand, 30519287 - 30519238
Alignment:
Q  379 aatcataccaatattcttaaatgtgtggagcaaagaaaagtagtaatcaat 429  Q
    |||||||||||||   ||||||||||||||||||||||| |||||||||||    
T  30519287 aatcataccaataaatttaaatgtgtggagcaaagaaaa-tagtaatcaat 30519238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 31404517 - 31404555
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  31404517 atgtgtggagcaaaggaaaatagtaatcaatatcaaagt 31404555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 4e-28; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 716 - 832
Target Start/End: Complemental strand, 32471378 - 32471262
Alignment:
Q  716 gttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaagttt 815  Q
    ||||||||||||||||| |||| ||||||||| |||||||||| || ||||||||||| |||||||||  |   ||||||||||||||||||||||| ||    
T  32471378 gttatgattcaaaatagaatatgaggaaatacgcttggcataatattattggttgaggcaaatggacatgtagttagtgatcctaaaatcaaggaagctt 32471279  T
Q  816 gggttgtgcataaatag 832  Q
    || ||||||||||||||    
T  32471278 ggattgtgcataaatag 32471262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 715 - 812
Target Start/End: Original strand, 39773170 - 39773267
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaag 812  Q
    ||||||||||||||||  ||||| ||||| ||||| ||||||||||||||||||||||  |||||||||  || |||||||||||||||| |||||||    
T  39773170 tgttatgattcaaaatgacatataaggaattacacatggcataacataattggttgagaaaaatggacatgtggctagtgatcctaaaattaaggaag 39773267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 715 - 832
Target Start/End: Complemental strand, 29367543 - 29367426
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaagtt 814  Q
    |||||||||||||||||  |||| ||||||||||||| | |||| |||||||||||| ||||||||  ||  | ||||| |||||||||| || ||| ||    
T  29367543 tgttatgattcaaaataatatatgaggaaatacacttagtataatataattggttgaagtaaatgggtacgcggctagtaatcctaaaattaaagaactt 29367444  T
Q  815 tgggttgtgcataaatag 832  Q
    |||||| | |||||||||    
T  29367443 tgggttatacataaatag 29367426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 29991379 - 29991341
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  29991379 atgtgtggagcaaagaaaagtagtaaccaatatcaaagt 29991341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 31105242 - 31105282
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    |||||||||| |||| |||||||||||||||||||||||||    
T  31105242 atgtgtggagtaaaggaaagtagtaatcaatatcaaagtaa 31105282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 441
Target Start/End: Original strand, 30843302 - 30843369
Alignment:
Q  375 tcaaaatcataccaatattcttaaatgtgtggagcaaa-gaaaagtagtaatcaatatcaaagtaacc 441  Q
    ||||||||| |||||||  |||| | |||||||||||| | |||||||||| ||||||||||||||||    
T  30843302 tcaaaatcacaccaataaacttagaagtgtggagcaaaaggaaagtagtaaccaatatcaaagtaacc 30843369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 55864 - 55910
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||||||||||||| || ||||||||||||||| || ||||||||    
T  55864 agacctagatctaagtatagagcaacaccacaagcataatcaaagca 55910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Complemental strand, 4796848 - 4796802
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  4796848 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 4796802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 437
Target Start/End: Complemental strand, 8153659 - 8153625
Alignment:
Q  403 gtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||| |||||||||||||||||||||||    
T  8153659 gtggagcaaaggaaagtagtaatcaatatcaaagt 8153625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 18126972 - 18126934
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  18126972 atgtgtggagtaaaggaaagtagtaatcaatatcaaagt 18126934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 20284005 - 20284051
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  20284005 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 20284051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 441
Target Start/End: Complemental strand, 23344291 - 23344249
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaacc 441  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||    
T  23344291 atgtgtggagcaaaggaaagtagtaaccaatatccaagtaacc 23344249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 23555367 - 23555329
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  23555367 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 23555329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 402 - 436
Target Start/End: Original strand, 24525351 - 24525385
Alignment:
Q  402 tgtggagcaaagaaaagtagtaatcaatatcaaag 436  Q
    |||| ||||||||||||||||||||||||||||||    
T  24525351 tgtgtagcaaagaaaagtagtaatcaatatcaaag 24525385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 25766799 - 25766837
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  25766799 atgtgtggagcaaagaaaagtagtaaccaataacaaagt 25766837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 29159719 - 29159765
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  29159719 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 29159765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 35854242 - 35854204
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  35854242 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 35854204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 47675979 - 47676017
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  47675979 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 47676017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 48489757 - 48489719
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  48489757 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 48489719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 49091578 - 49091624
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||||||| |||||||| ||||||||||||||| || ||||||||    
T  49091578 agacctagatttaagtgtagagcaacaccacaagcataatcaaagca 49091624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 439
Target Start/End: Original strand, 495833 - 495870
Alignment:
Q  402 tgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  495833 tgtggagcaaaggaaagtagtaaccaatatcaaagtaa 495870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 541
Target Start/End: Complemental strand, 2647888 - 2647831
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||| ||| ||||||| |||||||| || ||||||||||||||| || ||||||||    
T  2647888 caacaaaaaacagacctaaatctaagtttagagcaacaccacaagcataatcaaagca 2647831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 441
Target Start/End: Original strand, 23564884 - 23564953
Alignment:
Q  372 gactcaaaatcataccaatattcttaaatgtgtggagcaaagaaaagtagtaatcaatatcaaagtaacc 441  Q
    |||||||||||| || ||||  | || ||||||||||  |||||||||||| | ||||||||||||||||    
T  23564884 gactcaaaatcacactaataaacatagatgtgtggagtgaagaaaagtagtgaccaatatcaaagtaacc 23564953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 436
Target Start/End: Original strand, 36146254 - 36146291
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaag 436  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  36146254 atgtgtggagcaaaggaaagtagtaaccaatatcaaag 36146291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 541
Target Start/End: Complemental strand, 46516502 - 46516445
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||| ||| |||| || |||||||||||||||||||||| |||| || ||||||||    
T  46516502 caacaaaaaacagacttaaatctaagtgtaaagcaacaccaaaagcataatcaaagca 46516445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 2e-24; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 714 - 832
Target Start/End: Complemental strand, 32848192 - 32848074
Alignment:
Q  714 ttgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaagt 813  Q
    ||||||||||||||| | |||||| |  || |||| |||||||||||| ||||||||||||||||| |||  || ||  |||||||||||||||||||||    
T  32848192 ttgttatgattcaaatttgcatataaaaaattacatttggcataacatcattggttgaggtaaatgaacatgtggctcatgatcctaaaatcaaggaagt 32848093  T
Q  814 ttgggttgtgcataaatag 832  Q
    |||| ||||||||||||||    
T  32848092 ttggattgtgcataaatag 32848074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 715 - 829
Target Start/End: Complemental strand, 9618111 - 9617997
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaagtt 814  Q
    |||||||||  |||||||||||| | |||||||| ||| |||| ||||||||||||||| ||| ||| |  || |||||||||||| |||||| ||||||    
T  9618111 tgttatgatctaaaatagcatatgaagaaatacatttgacatatcataattggttgaggcaaagggagatgtggctagtgatcctagaatcaatgaagtt 9618012  T
Q  815 tgggttgtgcataaa 829  Q
    ||| |||||||||||    
T  9618011 tggattgtgcataaa 9617997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 715 - 811
Target Start/End: Complemental strand, 17011821 - 17011727
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaa 811  Q
    ||||||||| |||||||||| || || | |||||||||||||||||||||||||||||||||   | ||| || |||||||||||||||||||||||    
T  17011821 tgttatgatccaaaatagcaaatgagaagatacacttggcataacataattggttgaggtaa--tgtcacttggctagtgatcctaaaatcaaggaa 17011727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 715 - 811
Target Start/End: Original strand, 17545380 - 17545474
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaa 811  Q
    ||||||||| |||||||||| || || | |||||||||||||||||||||||||||||||||   | ||| || |||||||||||||||||||||||    
T  17545380 tgttatgatccaaaatagcaaatgagaagatacacttggcataacataattggttgaggtaa--tgtcacttggctagtgatcctaaaatcaaggaa 17545474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 717 - 831
Target Start/End: Complemental strand, 39721403 - 39721287
Alignment:
Q  717 ttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgact--agtgatcctaaaatcaaggaagtt 814  Q
    |||||||||||||||||| || |  ||||||||||| ||||| ||||||||| |||||||||||| ||||| ||  | ||||| |||||||||| ||  |    
T  39721403 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggtcgaggtaaatggatacatggctacaatgatcttaaaatcaagaaaact 39721304  T
Q  815 tgggttgtgcataaata 831  Q
    || ||||||||||||||    
T  39721303 tgagttgtgcataaata 39721287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 484 - 538
Target Start/End: Complemental strand, 5990753 - 5990699
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaa 538  Q
    |||||||||||||||||| ||||||||||| | ||| ||||||||| ||||||||    
T  5990753 caacaacaaatagacctaaatctaagtgtagaacaaaaccacaagcatattcaaa 5990699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 362 - 442
Target Start/End: Original strand, 32901992 - 32902073
Alignment:
Q  362 tgtgtatttggactcaaaatcataccaatattcttaaatgtgtggagc-aaagaaaagtagtaatcaatatcaaagtaacct 442  Q
    |||| ||| ||||||||||||| |||||||  |||| ||||||||||| ||||| |||||||||  |||||||||| |||||    
T  32901992 tgtgaattcggactcaaaatcagaccaataaacttagatgtgtggagcaaaagagaagtagtaactaatatcaaagcaacct 32902073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 1292311 - 1292351
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  1292311 atgtggggagcaaagaaaagtagtaaacaatatcaaagtaa 1292351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 12702473 - 12702513
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  12702473 atgtgtggagcaaaggaaagtagtaaccaatatcaaagtaa 12702513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 19491545 - 19491585
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  19491545 atgtgtggagcaaaggaaagtattaatcaatatcaaagtaa 19491585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 41366460 - 41366500
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  41366460 atgtgtggagcaaaggaaagtagtaaccaatatcaaagtaa 41366500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 527
Target Start/End: Complemental strand, 7493253 - 7493210
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaa 527  Q
    |||||||||||||| ||| ||||||||||| |||||||||||||    
T  7493253 caacaacaaatagatctaaatctaagtgtagagcaacaccacaa 7493210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 441
Target Start/End: Complemental strand, 8154106 - 8154064
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaacc 441  Q
    ||||||| || |||| |||||||||||||||||||||||||||    
T  8154106 atgtgtgaagtaaaggaaagtagtaatcaatatcaaagtaacc 8154064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 15213112 - 15213074
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  15213112 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 15213074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Complemental strand, 26403411 - 26403365
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  26403411 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 26403365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 30143666 - 30143628
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  30143666 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 30143628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 34254173 - 34254211
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  34254173 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 34254211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 439
Target Start/End: Original strand, 1345221 - 1345258
Alignment:
Q  402 tgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  1345221 tgtggagcaaaggaaagtagtaaccaatatcaaagtaa 1345258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 5689593 - 5689556
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaag 436  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  5689593 atgtgtggagcaaaggaaagtagtaaccaatatcaaag 5689556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 442
Target Start/End: Original strand, 11711808 - 11711889
Alignment:
Q  362 tgtgtatttggactcaaaatcataccaatattcttaaatgtgtggagc-aaagaaaagtagtaatcaatatcaaagtaacct 442  Q
    |||| ||| ||||||||||| | |||||||  |||| ||||||||||| |||| |||||||||| ||| || ||||||||||    
T  11711808 tgtgaattcggactcaaaattacaccaataaacttagatgtgtggagcaaaaggaaagtagtaaccaagataaaagtaacct 11711889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 439
Target Start/End: Complemental strand, 40321398 - 40321361
Alignment:
Q  402 tgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  40321398 tgtggagcaaaggaaagtagcaatcaatatcaaagtaa 40321361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 710 - 833
Target Start/End: Original strand, 45610535 - 45610659
Alignment:
Q  710 tcttttgttatgattcaaaatag-catattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaag 808  Q
    ||||||||||||||||||| | | ||||  || || |||||||||||||| |||||| ||||||| |||| ||||  | ||||||||| |||| ||||||    
T  45610535 tcttttgttatgattcaaattggacatagaagtaattacacttggcataatataatttgttgaggcaaatagacatgtaactagtgattctaagatcaag 45610634  T
Q  809 gaagtttgggttgtgcataaatagg 833  Q
    |||| || |||||||||||||||||    
T  45610635 gaaggtttggttgtgcataaatagg 45610659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 487 - 541
Target Start/End: Original strand, 37781771 - 37781825
Alignment:
Q  487 caacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  37781771 caacaaatagacctagatctaagtgtgaagcaacaccacaagcatattcaaagca 37781825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 753 - 832
Target Start/End: Complemental strand, 5842204 - 5842125
Alignment:
Q  753 gcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaagtttgggttgtgcataaatag 832  Q
    |||| ||||| ||| ||||||||||||| |||||||||| |||| ||||||| |||||||||| | |||| |||||||||    
T  5842204 gcatcacatatttgattgaggtaaatgggcacatgactattgatactaaaatgaaggaagtttagattgtacataaatag 5842125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 742 - 828
Target Start/End: Complemental strand, 5198982 - 5198896
Alignment:
Q  742 aaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaagtttgggttgtgcataa 828  Q
    ||||||||| |||||||||||||||||||||| |||||||||  || ||||||||   ||||||| ||||| |||| || |||||||    
T  5198982 aaatacactcggcataacataattggttgaggcaaatggacatgtggctagtgattaaaaaatcatggaagcttggattatgcataa 5198896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 470 - 541
Target Start/End: Complemental strand, 5269394 - 5269326
Alignment:
Q  470 aagcaacaacaagtcaacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||||||||  |||||| ||||| ||||||||||||||||| ||||||||||||||| || ||||||||    
T  5269394 aagcaacaacaa--caacaa-aaatatacctagatctaagtgtagagcaacaccacaagcataatcaaagca 5269326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 491 - 541
Target Start/End: Original strand, 10047291 - 10047341
Alignment:
Q  491 aaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||||| |||||||||||||| ||||||||||||||| || ||||||||    
T  10047291 aaatagacatagatctaagtgtagagcaacaccacaagcataatcaaagca 10047341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 497 - 539
Target Start/End: Complemental strand, 16630859 - 16630817
Alignment:
Q  497 acctagatctaagtgtaaagcaacaccacaagcttattcaaag 539  Q
    ||||||||||||||||||||||||||||||||| || ||||||    
T  16630859 acctagatctaagtgtaaagcaacaccacaagcataatcaaag 16630817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 541
Target Start/End: Complemental strand, 38152619 - 38152573
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  38152619 agacctagatctaagtgtatagcaacaccacaagcataatcaaagca 38152573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 715 - 783
Target Start/End: Original strand, 23406518 - 23406586
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggaca 783  Q
    |||||||||||||||||||| || || |||||||||||| | ||  |||||||||||| ||||| ||||    
T  23406518 tgttatgattcaaaatagcacatgagaaaatacacttggaaaaatgtaattggttgagctaaatagaca 23406586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 48893485 - 48893525
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  48893485 atgtgtggagcaaaggaaagtagtaaccaatatcaaagtaa 48893525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 742 - 828
Target Start/End: Original strand, 4848723 - 4848810
Alignment:
Q  742 aaatacacttggcataacataattggttgaggtaaatggacacatgactagtga-tcctaaaatcaaggaagtttgggttgtgcataa 828  Q
    ||||||| |||||||||||||||||||||| | |||||||||  || ||||||| |   ||||||||||||| |||| || |||||||    
T  4848723 aaatacatttggcataacataattggttgacgcaaatggacatgtggctagtgattaaaaaaatcaaggaagcttggattatgcataa 4848810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 400 - 442
Target Start/End: Original strand, 5207693 - 5207735
Alignment:
Q  400 tgtgtggagcaaagaaaagtagtaatcaatatcaaagtaacct 442  Q
    |||||||||||||| |||||||||||  |||||||||||||||    
T  5207693 tgtgtggagcaaaggaaagtagtaattgatatcaaagtaacct 5207735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 5369924 - 5369962
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  5369924 atgtgtggagtaaaggaaagtagtaatcaatatcaaagt 5369962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 5872143 - 5872105
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  5872143 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 5872105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Complemental strand, 25862203 - 25862157
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  25862203 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 25862157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 29999671 - 29999709
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  29999671 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 29999709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 37740951 - 37740913
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    |||||||||||| || |||||||||||||||||||||||    
T  37740951 atgtgtggagcacaggaaagtagtaatcaatatcaaagt 37740913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 46147238 - 46147276
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  46147238 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 46147276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 48143374 - 48143336
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  48143374 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 48143336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 56178478 - 56178516
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  56178478 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 56178516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 488 - 541
Target Start/End: Complemental strand, 42599762 - 42599709
Alignment:
Q  488 aacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||| | |||||||||||| |||| ||||||||||||||| || ||||||||    
T  42599762 aacaaacaaacctagatctaaatgtagagcaacaccacaagcataatcaaagca 42599709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 715 - 800
Target Start/End: Original strand, 29274471 - 29274555
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacacatgactagtgatccta 800  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||| |||||||||  |||||||||  || | ||||||||||    
T  29274471 tgttatgattcaaaatatc-tataaggaaatacacttggcataacatatttggttgagacaaatggacatgtggccagtgatccta 29274555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 362 - 441
Target Start/End: Original strand, 37282501 - 37282581
Alignment:
Q  362 tgtgtatttggactcaaaatcataccaatattcttaaatgtgtggagc-aaagaaaagtagtaatcaatatcaaagtaacc 441  Q
    |||| ||| ||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||| ||||| |||||||||    
T  37282501 tgtgaattcggactcaaaatcacaccaataaacttaaatgtgtggagcaaaagaaaagtaataattaatatgaaagtaacc 37282581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 484 - 541
Target Start/End: Complemental strand, 47704128 - 47704071
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||| ||| ||||||||    
T  47704128 caacaaaaaatagacctaaatctaagtgtagagcaacaccacaagtttaatcaaagca 47704071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 23555113 - 23555153
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  23555113 atgtgtggagcaaagaaaagtagtaatcaatgtcaaagtaa 23555153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 718 - 773
Target Start/End: Original strand, 32897267 - 32897322
Alignment:
Q  718 tatgattcaaaatagcatattaggaaatacacttggcataacataattggttgagg 773  Q
    ||||||||||||||  |||| || ||||||||||||||||||| ||||||||||||    
T  32897267 tatgattcaaaatactatatgagaaaatacacttggcataacagaattggttgagg 32897322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 400 - 437
Target Start/End: Complemental strand, 10925547 - 10925510
Alignment:
Q  400 tgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10925547 tgtgtggagcaaaggaaagtagtaatcaatatcaaagt 10925510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 541
Target Start/End: Original strand, 29651716 - 29651773
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||| ||| |||| |||||||||||||| ||||||||||||||| || ||||||||    
T  29651716 caacaaaaaacagacttagatctaagtgtagagcaacaccacaagcataatcaaagca 29651773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 834012 - 834052
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  834012 atgtgtggagcaaaggaaagtagtaaccaatatcaaagtaa 834052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 41361236 - 41361196
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  41361236 atgtgtggagcaaaggaaagtattaatcaatatcaaagtaa 41361196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 527
Target Start/End: Complemental strand, 48382667 - 48382631
Alignment:
Q  491 aaatagacctagatctaagtgtaaagcaacaccacaa 527  Q
    |||||||||||||||||||||| ||||||||||||||    
T  48382667 aaatagacctagatctaagtgtgaagcaacaccacaa 48382631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 50167022 - 50167062
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  50167022 atgtgtggagcaaaggaaagtagtaaccaatatcaaagtaa 50167062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 778
Target Start/End: Original strand, 12900713 - 12900776
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaat 778  Q
    ||||||||||||| |||||| || || |||||||||||||| ||  |||||||||||| |||||    
T  12900713 tgttatgattcaagatagcacatgagaaaatacacttggcaaaatgtaattggttgagctaaat 12900776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 437
Target Start/End: Original strand, 13316193 - 13316232
Alignment:
Q  398 aatgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  13316193 aatgtgtggagcaaaggaaagtagtaatcaataacaaagt 13316232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 717 - 815
Target Start/End: Original strand, 13399978 - 13400079
Alignment:
Q  717 ttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatggacac---atgactagtgatcctaaaatcaaggaagt 813  Q
    ||||||||||||||||||| | || || |||| |||| |||||||||||| ||||| ||||| || ||   ||| ||||| | | |||||||||||||||    
T  13399978 ttatgattcaaaatagcatttaagaaagtacatttggtataacataattgtttgagataaatcgatactatatggctagtaaacataaaatcaaggaagt 13400077  T
Q  814 tt 815  Q
    ||    
T  13400078 tt 13400079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 775588 - 775634
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  775588 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 775634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 3157191 - 3157153
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  3157191 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 3157153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 8550626 - 8550664
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  8550626 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 8550664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 13598314 - 13598360
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||||||||||||||| || |||||||||||| || ||||||||    
T  13598314 agacctagatctaagtgtagagaaacaccacaagcataatcaaagca 13598360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 385 - 439
Target Start/End: Complemental strand, 15820636 - 15820582
Alignment:
Q  385 accaatattcttaaatgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    |||||||  |||| ||||||||||||||| ||||||||||  |||||||||||||    
T  15820636 accaataaacttagatgtgtggagcaaaggaaagtagtaactaatatcaaagtaa 15820582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Complemental strand, 27104553 - 27104507
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  27104553 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 27104507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 44649992 - 44650046
Alignment:
Q  377 aaaatcataccaatattcttaaatgtgtggagcaaagaaaagtagtaatcaatat 431  Q
    |||||||| ||||||  |||| ||||||| |||||||||||||||||| ||||||    
T  44649992 aaaatcattccaataaacttagatgtgtgtagcaaagaaaagtagtaaccaatat 44650046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 751 - 833
Target Start/End: Original strand, 49138095 - 49138177
Alignment:
Q  751 tggcataacataattggttgaggtaaatggacacatgactagtgatcctaaaatcaaggaagtttgggttgtgcataaatagg 833  Q
    |||||||||||||||||| |||| |||| ||||  |  ||| | |||||||||| ||||||| |||| |||| ||||||||||    
T  49138095 tggcataacataattggtcgaggcaaattgacatgtagctattcatcctaaaataaaggaagcttggattgtacataaatagg 49138177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 49918676 - 49918638
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  49918676 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 49918638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 754 - 783
Target Start/End: Original strand, 4625300 - 4625329
Alignment:
Q  754 cataacataattggttgaggtaaatggaca 783  Q
    ||||||||||||||||||||||||||||||    
T  4625300 cataacataattggttgaggtaaatggaca 4625329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 439
Target Start/End: Original strand, 13659192 - 13659233
Alignment:
Q  398 aatgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    |||||||||||||||| |||||||||| ||| ||||||||||    
T  13659192 aatgtgtggagcaaaggaaagtagtaaccaacatcaaagtaa 13659233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 541
Target Start/End: Complemental strand, 40816924 - 40816867
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||| ||| ||||||| ||||||||||| ||||||||||| ||| || ||||||||    
T  40816924 caacaaaaaacagacctaaatctaagtgtagagcaacaccacgagcataatcaaagca 40816867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 436
Target Start/End: Original strand, 45644200 - 45644237
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaag 436  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  45644200 atgtgtggagcaaaggaaagtagtaaccaatatcaaag 45644237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 362 - 440
Target Start/End: Original strand, 27305522 - 27305600
Alignment:
Q  362 tgtgtatttggactcaaaatcataccaatattcttaaatgtgtggagcaaagaaaagtagtaatcaatatcaaagtaac 440  Q
    |||| ||| ||||||||||||| |||||||  ||   ||||||||||||||| |||||||||| |||||||||||||||    
T  27305522 tgtgaattcggactcaaaatcacaccaataaactatgatgtgtggagcaaaggaaagtagtaaccaatatcaaagtaac 27305600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 715 - 832
Target Start/End: Original strand, 46505886 - 46506003
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttg-aggtaaatggacacatgactagtgatcctaaaatcaaggaagt 813  Q
    ||||||||||||| ||||||| | |||||| ||||||||||||| || ||| |||| |  | |||||||||||| || ||||||||||||| ||||||      
T  46505886 tgttatgattcaatatagcatttgaggaaacacacttggcataatattattagttgaaattgaatggacacatgtctggtgatcctaaaataaaggaacc 46505985  T
Q  814 ttgggttgtgcataaatag 832  Q
    || || |||||||||||||    
T  46505986 tt-ggatgtgcataaatag 46506003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 715 - 780
Target Start/End: Complemental strand, 14594910 - 14594845
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatgg 780  Q
    ||||||||||||||||||||||| |  ||||| |||||| |||||| |||||||||| ||||||||    
T  14594910 tgttatgattcaaaatagcatatgaaaaaatagacttgggataacagaattggttgaagtaaatgg 14594845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 541
Target Start/End: Complemental strand, 8370658 - 8370612
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  8370658 agacctagatctaagtgtagagcaacaccacaagcataatcaaagca 8370612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 27026861 - 27026907
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  27026861 agacctagatctaagtgtagagcaacaccacaagcataatcaaagca 27026907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 399 - 439
Target Start/End: Original strand, 22834849 - 22834889
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  22834849 atgtgtggagcaaaggaaagtagtaaccaatatcaaagtaa 22834889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 538
Target Start/End: Original strand, 35925398 - 35925441
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaa 538  Q
    ||||||||||||||||||| ||||||||||||||| || |||||    
T  35925398 agacctagatctaagtgtagagcaacaccacaagcataatcaaa 35925441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 439
Target Start/End: Original strand, 44700331 - 44700366
Alignment:
Q  404 tggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    ||||||||||||||||||||| ||||||||||||||    
T  44700331 tggagcaaagaaaagtagtaaccaatatcaaagtaa 44700366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 538
Target Start/End: Original strand, 48438130 - 48438173
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaa 538  Q
    ||||||||||||||||||| ||||||||||||||| || |||||    
T  48438130 agacctagatctaagtgtagagcaacaccacaagcataatcaaa 48438173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 441
Target Start/End: Original strand, 2074924 - 2074966
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagtaacc 441  Q
    ||||||||||||||| |||||||||| |||||||||| |||||    
T  2074924 atgtgtggagcaaaggaaagtagtaaccaatatcaaaataacc 2074966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 7762592 - 7762554
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  7762592 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 7762554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 9635966 - 9636004
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  9635966 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 9636004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 26298904 - 26298950
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  26298904 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 26298950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 541
Target Start/End: Original strand, 27038210 - 27038252
Alignment:
Q  499 ctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||||||||||| ||||||||||||||| || ||||||||    
T  27038210 ctagatctaagtgtagagcaacaccacaagcataatcaaagca 27038252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 29813387 - 29813349
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  29813387 atgtgtggagcaaagaaaagtagtaactaatatcaaagt 29813349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Complemental strand, 40592954 - 40592908
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  40592954 agacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 40592908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 40734823 - 40734785
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  40734823 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 40734785  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Complemental strand, 40735708 - 40735670
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  40735708 atgtgtggagcaaaggaaagtagtaaccaatatcaaagt 40735670  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 529
Target Start/End: Complemental strand, 47924043 - 47924009
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagc 529  Q
    ||||||||||||||||||| |||||||||||||||    
T  47924043 agacctagatctaagtgtagagcaacaccacaagc 47924009  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 439
Target Start/End: Complemental strand, 16499341 - 16499300
Alignment:
Q  398 aatgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    |||||||||||||||| |||||||||| ||| ||||||||||    
T  16499341 aatgtgtggagcaaaggaaagtagtaaccaacatcaaagtaa 16499300  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 436
Target Start/End: Original strand, 29196232 - 29196269
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaag 436  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  29196232 atgtgtggagcaaaggaaagtagtaaccaatatcaaag 29196269  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 442
Target Start/End: Original strand, 40519107 - 40519156
Alignment:
Q  394 cttaaatgtgtggagcaaagaa-aagtagtaatcaatatcaaagtaacct 442  Q
    ||||||||||||||||||| |  ||||| |||||||||||||||||||||    
T  40519107 cttaaatgtgtggagcaaaaaggaagtaataatcaatatcaaagtaacct 40519156  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 715 - 780
Target Start/End: Original strand, 41910 - 41975
Alignment:
Q  715 tgttatgattcaaaatagcatattaggaaatacacttggcataacataattggttgaggtaaatgg 780  Q
    ||||||||||||||||||||||| |  ||||| |||||| |||||| |||||||||| ||||||||    
T  41910 tgttatgattcaaaatagcatatgaaaaaatagacttgggataacagaattggttgaagtaaatgg 41975  T

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Target: scaffold0148 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 541
Target Start/End: Original strand, 10634 - 10691
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||| ||| ||||||| ||||||||||| ||||||||||||||| || ||||||||    
T  10634 caacaaaaaacagacctaaatctaagtgtagagcaacaccacaagcataatcaaagca 10691  T

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Target: scaffold0076 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 541
Target Start/End: Complemental strand, 16181 - 16124
Alignment:
Q  484 caacaacaaatagacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    |||||||||||  |||||||||||||||| || ||||||||||| | |||||||||||    
T  16181 caacaacaaatttacctagatctaagtgtgaaacaacaccacaaacatattcaaagca 16124  T

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Target: scaffold1668 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 399 - 437
Target Start/End: Original strand, 1344 - 1382
Alignment:
Q  399 atgtgtggagcaaagaaaagtagtaatcaatatcaaagt 437  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  1344 atgtgtggagcaaaggaaagtagtaatcaatattaaagt 1382  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 2408 - 2454
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||||||||||||||| | ||||||||||||| || ||||||||    
T  2408 agacctagatctaagtgtagaacaacaccacaagcataatcaaagca 2454  T

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Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 495 - 541
Target Start/End: Original strand, 5599 - 5645
Alignment:
Q  495 agacctagatctaagtgtaaagcaacaccacaagcttattcaaagca 541  Q
    ||||||||||||||||||| || |||||||||||| || ||||||||    
T  5599 agacctagatctaagtgtagagaaacaccacaagcataatcaaagca 5645  T

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Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 439
Target Start/End: Original strand, 148953 - 148994
Alignment:
Q  398 aatgtgtggagcaaagaaaagtagtaatcaatatcaaagtaa 439  Q
    |||||||||||||||| |||||||||| ||| ||||||||||    
T  148953 aatgtgtggagcaaaggaaagtagtaaccaacatcaaagtaa 148994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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