View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5166-Insertion-3 (Length: 783)

Name: NF5166-Insertion-3
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5166-Insertion-3
NF5166-Insertion-3
[»] chr3 (10 HSPs)
chr3 (6-770)||(41559803-41560546)
chr3 (6-260)||(41555640-41555894)
chr3 (489-614)||(49983522-49983646)
chr3 (384-611)||(30041242-30041485)
chr3 (485-630)||(32211843-32211988)
chr3 (385-430)||(49983876-49983921)
chr3 (431-535)||(40344926-40345034)
chr3 (483-568)||(24650132-24650217)
chr3 (485-536)||(25295106-25295157)
chr3 (433-480)||(43105143-43105190)
[»] chr2 (12 HSPs)
chr2 (384-630)||(32872290-32872553)
chr2 (485-587)||(31404938-31405039)
chr2 (433-555)||(14200363-14200491)
chr2 (476-555)||(34262733-34262811)
chr2 (486-611)||(38214080-38214206)
chr2 (485-629)||(39063648-39063793)
chr2 (507-630)||(7011043-7011167)
chr2 (384-430)||(34309378-34309424)
chr2 (388-430)||(45723857-45723899)
chr2 (488-534)||(17368928-17368974)
chr2 (486-632)||(38496420-38496566)
chr2 (384-427)||(31405122-31405165)
[»] chr1 (7 HSPs)
chr1 (388-614)||(27442312-27442554)
chr1 (375-614)||(28723891-28724146)
chr1 (388-629)||(32715643-32715900)
chr1 (433-629)||(17971358-17971560)
chr1 (485-610)||(36437254-36437378)
chr1 (388-423)||(17971091-17971126)
chr1 (384-427)||(45691537-45691580)
[»] chr8 (10 HSPs)
chr8 (433-614)||(36408181-36408368)
chr8 (375-625)||(38209446-38209711)
chr8 (485-610)||(36054785-36054910)
chr8 (433-610)||(8251205-8251388)
chr8 (375-430)||(5923988-5924043)
chr8 (485-631)||(31658800-31658947)
chr8 (564-625)||(4641024-4641086)
chr8 (485-553)||(5923844-5923912)
chr8 (431-477)||(2152429-2152475)
chr8 (488-534)||(11778083-11778129)
[»] chr6 (5 HSPs)
chr6 (375-554)||(6657903-6658098)
chr6 (497-629)||(19780181-19780313)
chr6 (384-629)||(9425440-9425705)
chr6 (486-574)||(180345-180433)
chr6 (388-430)||(19780397-19780439)
[»] chr7 (13 HSPs)
chr7 (431-604)||(41508075-41508254)
chr7 (434-630)||(10599747-10599949)
chr7 (497-630)||(42935403-42935536)
chr7 (375-430)||(14568523-14568578)
chr7 (485-574)||(14658828-14658917)
chr7 (497-586)||(14568350-14568439)
chr7 (489-534)||(35333328-35333373)
chr7 (505-576)||(2195808-2195879)
chr7 (433-480)||(10409798-10409845)
chr7 (391-430)||(10409861-10409900)
chr7 (439-480)||(13777745-13777786)
chr7 (497-574)||(17757477-17757554)
chr7 (431-480)||(25536490-25536539)
[»] chr4 (6 HSPs)
chr4 (485-627)||(54863874-54864018)
chr4 (388-555)||(25376784-25376968)
chr4 (431-531)||(31707346-31707449)
chr4 (482-574)||(21128101-21128193)
chr4 (388-423)||(54864029-54864064)
chr4 (485-562)||(18838769-18838845)
[»] scaffold0026 (1 HSPs)
scaffold0026 (485-536)||(68841-68892)
[»] chr5 (4 HSPs)
chr5 (488-610)||(18704968-18705090)
chr5 (484-631)||(3629262-3629409)
chr5 (485-536)||(11983635-11983686)
chr5 (504-574)||(17686237-17686308)
[»] scaffold1809 (1 HSPs)
scaffold1809 (485-574)||(551-640)
[»] scaffold0015 (1 HSPs)
scaffold0015 (530-630)||(38931-39031)


Alignment Details
Target: chr3 (Bit Score: 553; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 6 - 770
Target Start/End: Complemental strand, 41560546 - 41559803
Alignment:
Q  6 catgaacagcctttgtgtggatttcgaggtcatctgaagttaggagagagaaatcaatgactgagatggaagctgcaagctcctctgtaacatcaacaat 105  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41560546 catgaacagcctttgtgtggattttgaggtcatctgaggttaggagagagaaatcaatgactgggatggaagctgcaagctcctctgtaacatcaacaat 41560447  T
Q  106 atcatcaggttctgtgagggagtggtaacttgaaggaataggaaaggctccgtttgattgtgcaaaggatttgatacttgaaatatttgatgcatcaact 205  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||                     ||||||||||||||||||||||||||||||    
T  41560446 atcatcaggttctgcgagggagtggtaacttgaaggaataggaaaggct---------------------ttgatacttgaaatatttgatgcatcaact 41560368  T
Q  206 tttgtaggttctgatgatgaaatgaaaggagctgaagccatggatgtatatttgagtgattg--------gtattgaattaatagtattgatgtaattat 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  41560367 tttgtaggttctgatgatgaaatgaaaggagctgaagccatggatgtatatttgagtgattgagtggttggtattgaattaatagtattgatgtaattat 41560268  T
Q  298 aaacagacagaattattgaagtgtgatcttgaagagaaataagaagtgatgagaataataaatatgtactccctcctctccggtaatttttataagaaaa 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  41560267 aaacagacagaattattgaagtgtgatcttgaagagaaataagaagtgatgagaataataaatatgtactccctcctctctg-taatttttataagaaaa 41560169  T
Q  398 gaaaccaaaaatcatcaaaaccaagacaatcatactttttgaatgtttttataattatacctttataaaaatttgtgaagtataactcactaatattaga 497  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  41560168 gaaaccaaaaatcatgaaaaccaagataatcatactttttgaatgtttttataaatataccttcataaaaatttgtgaagtataactcactaatattaga 41560069  T
Q  498 aagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattga 597  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41560068 aagacaaacattaaatgagagttaaaaaagtcttttaaatcataaatgtatcttaaaaattatgattttttcttatatattggaccaaattttttattga 41559969  T
Q  598 aaattttcctataaataacaccggagggagtatatgatatttagaatgaaattattgagaaagattgaaagtcctagagacgcaccaatccacgtggccc 697  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||  |||||||||||||||||||| ||    
T  41559968 aaatttttctataaataacaccggagggagtatatgatatttagaatgaaattattgagaaaaattg-aagtcct--agacgcaccaatccacgtgg-cc 41559873  T
Q  698 gtgtatggcacaarggcaattaaggcatgtgtcattttgtgtagcaatgatacccatatacgtatatatatat 770  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||    
T  41559872 gtgtatggcacaa-ggcaattaaggcatgtgtcattttctgtagcaatgata-ccat-tacgtatatatatat 41559803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 41555894 - 41555640
Alignment:
Q  6 catgaacagcctttgtgtggatttcgaggtcatctgaagttaggagagagaaatcaatgactgagatggaagctgcaagctcctctgtaacatcaacaat 105  Q
    |||||||||| |||||||||||||   ||||||||||||| || |||||||||||||||| || |||||||||||||| ||| |||| |||||||| |||    
T  41555894 catgaacagcttttgtgtggatttgagggtcatctgaagtgagcagagagaaatcaatgattgggatggaagctgcaatctcatctgcaacatcaataat 41555795  T
Q  106 atcatcaggttctgtgagggagtggtaacttgaaggaataggaaaggctccgtttgattgtgcaaaggatttgatacttgaaatatttgatgcatcaact 205  Q
    |||| || |||||||||||||||||||| | ||||||||  || ||| ||| |||||||  ||||||| |||||| |||||||||||||||| || |||     
T  41555794 atcaccatgttctgtgagggagtggtaattggaaggaatgagagaggttccatttgattccgcaaaggctttgatgcttgaaatatttgatgtatgaacc 41555695  T
Q  206 tttgtaggttctgatgatgaaatgaaaggagctgaagccatggatgtatatttga 260  Q
    ||||| |||||||||||||||||   || |||||||||||||||||||| |||||    
T  41555694 tttgttggttctgatgatgaaattgtagtagctgaagccatggatgtatctttga 41555640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 489 - 614
Target Start/End: Complemental strand, 49983646 - 49983522
Alignment:
Q  489 aatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaatt 588  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||||  ||||||||| ||||||| || ||| ||||||||||||| | || | ||||    
T  49983646 aatattaaaaagacaaacattaaatgagggttagaaaagtcttttaaacaataaatgtatcttaaaagttgtgactttttcttatatatttgatc-aatt 49983548  T
Q  589 ttttattgaaaattttcctataaata 614  Q
    |||| |||||||||||||||||||||    
T  49983547 tttttttgaaaattttcctataaata 49983522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 384 - 611
Target Start/End: Original strand, 30041242 - 30041485
Alignment:
Q  384 tttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat-----------actttttgaatgtttttataattatacctttataaaaatttg 472  Q
    |||||||||||||| |||  |||||||||||||||||||||||||||           | ||||||||||||||||||| |||||| | ||||| |||||    
T  30041242 tttttataagaaaaaaaataaaaaatcatcaaaaccaagacaatcattagtggttgtaattttttgaatgtttttataaatataccctcataaagatttg 30041341  T
Q  473 tgaagtat-aact-----cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgatttt 566  Q
    |||||||| || |     ||||||||||| ||||||||||||||| | ||| ||| ||||||||||||||  |||||| |||||| ||| || | | |||    
T  30041342 tgaagtattaaatataaccactaatattaaaaagacaaacattaattaagggttagaaaagtcttttaaacaataaatatacctt-aaagttgtcacttt 30041440  T
Q  567 ttcttatatactggaccaaattttttattgaaaattttcctataa 611  Q
    |||| ||||| |||||||||    || |||||||||||| |||||    
T  30041441 ttctaatatattggaccaaaaaaatttttgaaaattttcttataa 30041485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 485 - 630
Target Start/End: Original strand, 32211843 - 32211988
Alignment:
Q  485 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacca 584  Q
    ||||||||||| ||||||||||||||||| | |  || ||||||||||||||  |||| |  ||||||||| || |||  |||||||||| |   |||||    
T  32211843 cactaatattaaaaagacaaacattaaataacgggtagaaaagtcttttaaacaataactacaccttaaaagttgtgaaattttcttataaataagacca 32211942  T
Q  585 aattttttattgaaaattttcctataaataacaccggagggagtat 630  Q
    |   |||| |||||||||||| |||| |||  ||||||||||||||    
T  32211943 acaatttttttgaaaattttcttatatataggaccggagggagtat 32211988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 385 - 430
Target Start/End: Complemental strand, 49983921 - 49983876
Alignment:
Q  385 ttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat 430  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||    
T  49983921 ttttataagaaaagaaatcaaaaatcattaaaaccaagacaatcat 49983876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 431 - 535
Target Start/End: Original strand, 40344926 - 40345034
Alignment:
Q  431 actttttgaatgtttttataattatacctttataaaaatttgtgaagtataa----ctcactaatattagaaagacaaacattaaatgaggattaaaaaa 526  Q
    ||||||||||| |||||| || |||||| ||||||||| |||||||  || |    ||||||||||||| ||||||||| |||||||||||  || ||||    
T  40344926 actttttgaatatttttacaaatatacccttataaaaaattgtgaaccattaaatactcactaatattaaaaagacaaatattaaatgaggggtataaaa 40345025  T
Q  527 gtcttttaa 535  Q
    |||| ||||    
T  40345026 gtctcttaa 40345034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 483 - 568
Target Start/End: Complemental strand, 24650217 - 24650132
Alignment:
Q  483 ctcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgatttttt 568  Q
    ||||||||||||| ||||||||| |||||| || | |||||||||| |||| ||  |||||| |||||||||| || | |||||||    
T  24650217 ctcactaatattaaaaagacaaaaattaaaagaaggttaaaaaagtttttttaacaataaatataccttaaaagttgtaatttttt 24650132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 536
Target Start/End: Original strand, 25295106 - 25295157
Alignment:
Q  485 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaa 536  Q
    ||||||||||| ||||| || ||||||||||||  |||||||||||||||||    
T  25295106 cactaatattaaaaagagaagcattaaatgagggataaaaaagtcttttaaa 25295157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 480
Target Start/End: Original strand, 43105143 - 43105190
Alignment:
Q  433 tttttgaatgtttttataattatacctttataaaaatttgtgaagtat 480  Q
    |||||||||||||||| || |||||| | |||||||||||||||||||    
T  43105143 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtat 43105190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 384 - 630
Target Start/End: Complemental strand, 32872553 - 32872290
Alignment:
Q  384 tttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat-----------actttttgaatgtttttataattatacctttataaaaatttg 472  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||           | |||||||||||||||| || |||||| | ||||||| |||    
T  32872553 tttttataagaaaagaaaccaaagatcatcaaaaccaagacaatcattagtggttgtaattttttgaatgtttttacaaatataccctcataaaaaattg 32872454  T
Q  473 tgaagtataa------ctcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgatttt 566  Q
    |||||||| |      | ||||||||||| || |||||||||||||| ||| ||  ||||||||||||||  ||||||||| ||||||| | |  | |||    
T  32872453 tgaagtattaaatatacccactaatattaaaaggacaaacattaaattagggttggaaaagtcttttaaacaataaatgtaacttaaaagtcacaacttt 32872354  T
Q  567 ttcttatatactggaccaaattttttattgaaaattttcctataaataacaccggagggagtat 630  Q
    |||||||||| | ||||||| ||||| ||||||| |||| ||||||||  |||||| |||||||    
T  32872353 ttcttatatatttgaccaaagttttttttgaaaaatttcttataaataggaccggaaggagtat 32872290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 485 - 587
Target Start/End: Complemental strand, 31405039 - 31404938
Alignment:
Q  485 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacca 584  Q
    ||||||||||| ||||||||| ||||||||||| ||| ||||||||||||||  |||||||||||||||||| ||||| ||||||||||||  |||||||    
T  31405039 cactaatattaaaaagacaaatattaaatgagggttagaaaagtcttttaaaaaataaatgtaccttaaaaa-tatgactttttcttatattttggacca 31404941  T
Q  585 aat 587  Q
    |||    
T  31404940 aat 31404938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 433 - 555
Target Start/End: Original strand, 14200363 - 14200491
Alignment:
Q  433 tttttgaatgtttttataattatacctttataaaaatttgtgaagtataa------ctcactaatattagaaagacaaacattaaatgaggattaaaaaa 526  Q
    |||||||||||||||| || |||||| | ||||||||||||||||||| |      ||||||||||||  |||||  |||||||||||||| ||||||||    
T  14200363 tttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatatactcactaatattgaaaagatcaacattaaatgagggttaaaaaa 14200462  T
Q  527 gtcttttaaatcataaatgtaccttaaaa 555  Q
    ||||||||||| ||||||||| |||||||    
T  14200463 gtcttttaaataataaatgtatcttaaaa 14200491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 476 - 555
Target Start/End: Complemental strand, 34262811 - 34262733
Alignment:
Q  476 agtataactcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaa 555  Q
    |||||||| ||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||  ||||||| |||||||||    
T  34262811 agtataac-cactaatattaaaaagacaaacattaattgagggttagaaaagtcttttaaacaataaatgaaccttaaaa 34262733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 486 - 611
Target Start/End: Complemental strand, 38214206 - 38214080
Alignment:
Q  486 actaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacc-a 584  Q
    |||||||||| ||||| ||  |||||||||||  || ||||||||||||||  ||||||  ||||||||| || ||| ||||||||||| | |||||| |    
T  38214206 actaatattaaaaagagaagtattaaatgagggatataaaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattggaccaa 38214107  T
Q  585 aattttttattgaaaattttcctataa 611  Q
    |||||||| |||||| ||||| |||||    
T  38214106 aatttttttttgaaatttttcttataa 38214080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 485 - 629
Target Start/End: Original strand, 39063648 - 39063793
Alignment:
Q  485 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacca 584  Q
    ||||||||||| ||||| ||  |||||||||| | || ||||||||||||||  ||||||  ||||||||| || ||| ||||||||||| | |||||||    
T  39063648 cactaatattaaaaagagaagtattaaatgagcaatataaaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaattggacca 39063747  T
Q  585 aattt-tttattgaaaattttcctataaataacaccggagggagta 629  Q
    | ||| ||| || ||||||||| |||||  |  |||||||||||||    
T  39063748 attttatttttttaaaattttcttataataaggaccggagggagta 39063793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 507 - 630
Target Start/End: Complemental strand, 7011167 - 7011043
Alignment:
Q  507 attaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaatt-ttttattgaaaattttc 605  Q
    ||||||||||| ||| ||||||||||||||  ||||||||| |||||||||| ||| ||||||||||| |  | | ||| || |||| || |||||||||    
T  7011167 attaaatgagggttagaaaagtcttttaaacaataaatgtatcttaaaaattgtgactttttcttataaatagaatcaatttattttttttaaaattttc 7011068  T
Q  606 ctataaataacaccggagggagtat 630  Q
     ||||||||  |||||| |||||||    
T  7011067 ttataaataggaccggatggagtat 7011043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 34309424 - 34309378
Alignment:
Q  384 tttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat 430  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  34309424 tttttataagaaaataaaccaaaaatcatcaaaatcaagacaatcat 34309378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 430
Target Start/End: Original strand, 45723857 - 45723899
Alignment:
Q  388 tataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat 430  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  45723857 tataagaaaagaaaccaaaaatcatcaaaaccaaaacaatcat 45723899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 534
Target Start/End: Original strand, 17368928 - 17368974
Alignment:
Q  488 taatattagaaagacaaacattaaatgaggattaaaaaagtctttta 534  Q
    |||||||| ||||||||||||||||| |||| |||||||||||||||    
T  17368928 taatattaaaaagacaaacattaaataaggactaaaaaagtctttta 17368974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 486 - 632
Target Start/End: Complemental strand, 38496566 - 38496420
Alignment:
Q  486 actaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaa 585  Q
    |||||||||| ||| |||||| |||||| |||  || ||| ||||||||||  |||| | ||||||||||||| |||  |||||||||| |  |||| ||    
T  38496566 actaatattaaaaatacaaacgttaaataaggggtagaaaggtcttttaaacaataactataccttaaaaattctgacattttcttataaataggactaa 38496467  T
Q  586 attttttattgaaaattttcctataaataacaccggagggagtatat 632  Q
      | ||| |||||||||||| |||| |||  | ||||||||||||||    
T  38496466 catattttttgaaaattttcttatatataggatcggagggagtatat 38496420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 31405165 - 31405122
Alignment:
Q  384 tttttataagaaaagaaaccaaaaatcatcaaaaccaagacaat 427  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||    
T  31405165 tttttataagaaaagaaattaaaaatcttcaaaaccaagacaat 31405122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 9e-32; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 388 - 614
Target Start/End: Original strand, 27442312 - 27442554
Alignment:
Q  388 tataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat-----------actttttgaatgtttttataattatacctttataaaaatttgtgaa 476  Q
    |||||||||||||||||||||| ||||||||||||||||||||           | |||||||||||||||| || |||| | | |||||||||||||||    
T  27442312 tataagaaaagaaaccaaaaattatcaaaaccaagacaatcattagttgttgcaattttttgaatgtttttacaaatatatcctcataaaaatttgtgaa 27442411  T
Q  477 gtataa------ctcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttct 570  Q
    |||| |      | || ||||||| ||||||| |||||||||||||| ||| ||||||||||||||   ||||| ||| |||||| || |||||||||||    
T  27442412 gtattaaatatacccattaatatt-gaaagaccaacattaaatgagggttagaaaagtcttttaaacactaaatatactttaaaagttgtgattttttct 27442510  T
Q  571 tatatactggaccaaattttttattgaaaattttcctataaata 614  Q
    |||| |  ||||||| |||||| |||||||||||| ||||||||    
T  27442511 tataaataggaccaagtttttttttgaaaattttcttataaata 27442554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 375 - 614
Target Start/End: Original strand, 28723891 - 28724146
Alignment:
Q  375 ctccggtaatttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat-----------actttttgaatgtttttataattatacctttat 463  Q
    ||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||           | |||||||||| ||||| |  |||||| | ||    
T  28723891 ctccggtcatttttataagaaaagaaatcaaaaatcatcataaccaagacaatcattagcggttgtaattttttgaatgcttttacagatataccctcat 28723990  T
Q  464 aaaaatttgtgaagtat-aact-----cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaat 557  Q
    ||||||||||||||||| || |     ||||||||||| ||||| ||||||||| ||||| ||| ||||||||||||||| ||||||| || || ||| |    
T  28723991 aaaaatttgtgaagtattaaatataaccactaatattaaaaagataaacattaattgagggttagaaaagtcttttaaataataaatgcacatt-aaagt 28724089  T
Q  558 tatgattttttcttatatactggaccaaattttttattgaaaattttcctataaata 614  Q
    | ||| ||||||||||||| |||||||| |||||| || |||| ||||  |||||||    
T  28724090 tgtgactttttcttatatattggaccaattttttttttaaaaagtttctaataaata 28724146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 388 - 629
Target Start/End: Complemental strand, 32715900 - 32715643
Alignment:
Q  388 tataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat-----------actttttgaatgtttttataattatacctttataaaaatttgtgaa 476  Q
    |||||||||||||||||||||||||||||||||||||||||||           | |||||||||||||||| || |||| | | |||||||||||||||    
T  32715900 tataagaaaagaaaccaaaaatcatcaaaaccaagacaatcattagttgttgtaattttttgaatgtttttacaaatatatcctcataaaaatttgtgaa 32715801  T
Q  477 gtat------aactcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttct 570  Q
    ||||       || ||||||||||  |||||  ||||||||||||||  || ||||| ||||||||  ||||||| ||||||||| || ||| |||||||    
T  32715800 gtattaaatatacccactaatattgaaaagatcaacattaaatgagggctagaaaagacttttaaacaataaatg-accttaaaatttgtgactttttct 32715702  T
Q  571 tatatactggaccaaattttttattgaaaattttcctataaataacaccggagggagta 629  Q
    |||| |  |||||||||||||| |  ||||||||  |||| |||  |||||||||||||    
T  32715701 tataaataggaccaaattttttttaaaaaattttgttatatataggaccggagggagta 32715643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 433 - 629
Target Start/End: Original strand, 17971358 - 17971560
Alignment:
Q  433 tttttgaatgtttttataattatacctttataaaaatttgtgaagtataa------ctcactaatattagaaagacaaacattaaatgaggattaaaaaa 526  Q
    |||||||||||||||| || |||||| |  |||||||||||||||||| |      | ||||||||||  |||||| |||||||||||||| ||| ||||    
T  17971358 tttttgaatgtttttacaaatataccctcttaaaaatttgtgaagtattaaatatacacactaatattgaaaagaccaacattaaatgagggttagaaaa 17971457  T
Q  527 gtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattgaaaattttcctataaataacaccggaggga 626  Q
    ||||||||||  |||||| |||||||||| || ||| ||||||||||| |  ||||||||   ||| |||||||||||| |||| |||  ||| ||||||    
T  17971458 gtcttttaaacaataaatataccttaaaagttgtgactttttcttataaataggaccaaaacgttttttgaaaattttcttatatataggaccagaggga 17971557  T
Q  627 gta 629  Q
    |||    
T  17971558 gta 17971560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 485 - 610
Target Start/End: Original strand, 36437254 - 36437378
Alignment:
Q  485 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacca 584  Q
    ||||||||||| ||||||| |||||||||||||  ||||||||||||||||   |||| | | |||||||| || |||  |||||||||| |  ||||||    
T  36437254 cactaatattaaaaagacagacattaaatgagggataaaaaagtcttttaagcaataactat-ccttaaaagttgtgacattttcttataaataggacca 36437352  T
Q  585 aattttttattgaaaattttcctata 610  Q
    ||  |||| |||||||||||| ||||    
T  36437353 aaactttttttgaaaattttcttata 36437378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 388 - 423
Target Start/End: Original strand, 17971091 - 17971126
Alignment:
Q  388 tataagaaaagaaaccaaaaatcatcaaaaccaaga 423  Q
    ||||||||||||||||||||||||||||||||||||    
T  17971091 tataagaaaagaaaccaaaaatcatcaaaaccaaga 17971126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 384 - 427
Target Start/End: Original strand, 45691537 - 45691580
Alignment:
Q  384 tttttataagaaaagaaaccaaaaatcatcaaaaccaagacaat 427  Q
    |||||||||||| ||||| |||||||||||||||||||||||||    
T  45691537 tttttataagaagagaaatcaaaaatcatcaaaaccaagacaat 45691580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 433 - 614
Target Start/End: Original strand, 36408181 - 36408368
Alignment:
Q  433 tttttgaatgtttttataattatacctttataaaaatttgtgaagtataact------cactaatattagaaagacaaacattaaatgaggattaaaaaa 526  Q
    |||||||||||||||| || |||||| | |||||||||||| |||||| | |      ||||||||||| |||||||||||||||| |||| ||||||||    
T  36408181 tttttgaatgtttttacaaatataccctcataaaaatttgttaagtattaattatatccactaatattaaaaagacaaacattaaacgagggttaaaaaa 36408280  T
Q  527 gtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaa-ttttttattgaaaattttcctataaata 614  Q
    || | |||||  ||||||||||||| ||| || ||| |||||||||||||   ||||||| |||||| |||||||||||| ||||||||    
T  36408281 gtttgttaaacaataaatgtacctt-aaagttgtgactttttcttatatataagaccaaagtttttttttgaaaattttcttataaata 36408368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 375 - 625
Target Start/End: Original strand, 38209446 - 38209711
Alignment:
Q  375 ctccggtaatttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat-----------actttttgaatgtttttataattatacctttat 463  Q
    |||||||  ||| |||||||||| ||| ||||||||||||||||||||| ||||||           | ||||| ||| ||||||||| |||||| || |    
T  38209446 ctccggtcctttatataagaaaaaaaatcaaaaatcatcaaaaccaagataatcattacttgttgaaattttttaaatatttttataaatataccctttt 38209545  T
Q  464 aaaaatttgtgaagtata------actcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaat 557  Q
    |||||||||||||||||       || ||||||||||  |||||| |||||||||||||| ||| | ||||||||||||  ||||||||||||||||| |    
T  38209546 aaaaatttgtgaagtatttaatatacccactaatattgaaaagaccaacattaaatgagggttagagaagtcttttaaacaataaatgtaccttaaaagt 38209645  T
Q  558 tatgattttttcttatatactggaccaaattttttattgaaaattttcctataaataacaccggaggg 625  Q
    | ||| ||||||||||| |   ||||||||||||| ||  |||||||| |||| |||  |||||||||    
T  38209646 tgtgactttttcttataaatatgaccaaattttttttt--aaattttcttatatataggaccggaggg 38209711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 485 - 610
Target Start/End: Complemental strand, 36054910 - 36054785
Alignment:
Q  485 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacca 584  Q
    ||||||||||| ||||||||||||||| | |||  || ||||||||||||||  |||||| |||||||||| || |||  |||||||||| |  ||||||    
T  36054910 cactaatattaaaaagacaaacattaattaaggggtataaaagtcttttaaacaataaatataccttaaaagttgtgacattttcttataaataggacca 36054811  T
Q  585 aattttttattgaaaattttcctata 610  Q
    ||  || | |||||||||||| ||||    
T  36054810 aaaattattttgaaaattttcttata 36054785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 433 - 610
Target Start/End: Complemental strand, 8251388 - 8251205
Alignment:
Q  433 tttttgaatgtttttataattatacctttataaaaatttgtgaagtat------aactcactaatattagaaagacaaacattaaatgaggattaaaaaa 526  Q
    ||||||||| |||||| || |||||| | ||||||| |||||||| ||      ||||||||||||||| |||||||| |||||||| | |   |||||     
T  8251388 tttttgaatatttttacaaatataccctcataaaaaattgtgaagcattaaataaactcactaatattaaaaagacaaccattaaataatggggaaaaag 8251289  T
Q  527 gtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattgaaaattttcctata 610  Q
    |||||||||   |||| |  ||||||||| || |||| |||||||||| |  ||||||||| |||| || ||||||||| ||||    
T  8251288 gtcttttaagcaataattacaccttaaaagttgtgatattttcttataaataggaccaaatattttttttaaaattttcttata 8251205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 375 - 430
Target Start/End: Complemental strand, 5924043 - 5923988
Alignment:
Q  375 ctccggtaatttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat 430  Q
    |||||||  |||||||||||||| ||| ||||||||||||||||||||| ||||||    
T  5924043 ctccggtcttttttataagaaaataaatcaaaaatcatcaaaaccaagataatcat 5923988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 485 - 631
Target Start/End: Complemental strand, 31658947 - 31658800
Alignment:
Q  485 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacca 584  Q
    ||||| ||||| ||||||||||||||||| | | ||||||||||||||||||  |||| |  | ||||||| || |||| |||||||||| |  | ||||    
T  31658947 cactagtattaaaaagacaaacattaaataaaggttaaaaaagtcttttaaacaataactacatcttaaaagttgtgatattttcttataaatagaacca 31658848  T
Q  585 a-attttttattgaaaattttcctataaataacaccggagggagtata 631  Q
    | | ||||| || ||||||||| |||| |||| |||||| | ||||||    
T  31658847 acaattttttttaaaaattttcttatatataagaccggatgaagtata 31658800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 564 - 625
Target Start/End: Complemental strand, 4641086 - 4641024
Alignment:
Q  564 tttttcttatatactggaccaaatt-ttttattgaaaattttcctataaataacaccggaggg 625  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| ||||||||  |||||||||    
T  4641086 tttttcttatatattggaccaaattttttttttgaaaattttcttataaataggaccggaggg 4641024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 553
Target Start/End: Complemental strand, 5923912 - 5923844
Alignment:
Q  485 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaa 553  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||    ||||||  |||||||||||||||    
T  5923912 cactaatattaaaaagacaaacattaaatgagggttagaaaaaaaatttaaacaataaatgtaccttaa 5923844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 431 - 477
Target Start/End: Complemental strand, 2152475 - 2152429
Alignment:
Q  431 actttttgaatgtttttataattatacctttataaaaatttgtgaag 477  Q
    ||||||||||| ||||||||| |||||| ||||||||| ||||||||    
T  2152475 actttttgaatatttttataaatatacccttataaaaaattgtgaag 2152429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 534
Target Start/End: Complemental strand, 11778129 - 11778083
Alignment:
Q  488 taatattagaaagacaaacattaaatgaggattaaaaaagtctttta 534  Q
    |||||||| ||||||||||||||||| ||| |||| |||||||||||    
T  11778129 taatattaaaaagacaaacattaaataagggttaagaaagtctttta 11778083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 375 - 554
Target Start/End: Complemental strand, 6658098 - 6657903
Alignment:
Q  375 ctccggtaatttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat----------actttttgaatgtttttataattatacctttata 464  Q
    |||||||  ||||||||||||||||||||||||||||||||||||  |||||||||          | ||||| ||||| |||| || |||||| | |||    
T  6658098 ctccggtcctttttataagaaaagaaaccaaaaatcatcaaaaccttgacaatcattagtggttgtaattttttaatgtatttacaaatataccctcata 6657999  T
Q  465 aaaatttgtgaagtataa------ctcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaa 554  Q
    |||||||||||||||| |      | ||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||  ||||||||||||||||    
T  6657998 aaaatttgtgaagtattaaatatacccactaatattaaaaagacaaacattaaatgagggttagaaaagtcatttaaacaataaatgtaccttaaa 6657903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 497 - 629
Target Start/End: Complemental strand, 19780313 - 19780181
Alignment:
Q  497 aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattg 596  Q
    ||||| ||||||||||||||| ||| ||||||||||||||  |||||| || ||||||| ||   | |||||||||||||  |||||||||||||| |||    
T  19780313 aaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaagttgaaactttttcttatatataggaccaaatttttttttg 19780214  T
Q  597 aaaattttcctataaataacaccggagggagta 629  Q
    ||||||||| |||| |||  | |||||||||||    
T  19780213 aaaattttcttatatatagaatcggagggagta 19780181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 384 - 629
Target Start/End: Complemental strand, 9425705 - 9425440
Alignment:
Q  384 tttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcatac------------tttttgaatgtttttataattatacctttataaaaattt 471  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||              |||||||||||||||| || |||||  | |||||| | |    
T  9425705 tttttataagaagagaaaccaaaaatcatcaaaaccaagaaaatcattagttgttgcaatttttttgaatgtttttacaaatatactctcataaaattct 9425606  T
Q  472 gtgaagtataac------tcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattt 565  Q
    ||||||||| |       |||||| ||| | ||||| ||||||||||||||||||||||||||||||||||  |||||| ||||| |||| || ||||||    
T  9425605 gtgaagtattaaatatattcactattatgaaaaagataaacattaaatgaggattaaaaaagtcttttaaacaataaatatacctcaaaagttgtgattt 9425506  T
Q  566 tttctt---atatactggaccaaattttttattgaaaattttcctataaataacaccggagggagta 629  Q
    ||| ||   ||| | |||| ||| ||| || |||||||||||  ||||||||| ||| |||||||||    
T  9425505 tttttttttataaattggatcaattttgtt-ttgaaaattttgttataaataagacctgagggagta 9425440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 574
Target Start/End: Complemental strand, 180433 - 180345
Alignment:
Q  486 actaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata 574  Q
    |||||||||| ||||||||||||||||| |||  || |||||||||||||   |||| |  | |||||||||| |||| ||||||||||    
T  180433 actaatattaaaaagacaaacattaaataaggggtataaaagtcttttaagcaataactacatcttaaaaattgtgatattttcttata 180345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 388 - 430
Target Start/End: Complemental strand, 19780439 - 19780397
Alignment:
Q  388 tataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat 430  Q
    |||||||||||||| || |||||||||||||||||| ||||||    
T  19780439 tataagaaaagaaatcataaatcatcaaaaccaagataatcat 19780397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 431 - 604
Target Start/End: Complemental strand, 41508254 - 41508075
Alignment:
Q  431 actttttgaatgtttttataattatacctttataaaaatttgtgaagtataa------ctcactaatattagaaagacaaacattaaatgaggattaaaa 524  Q
    |||||||||||||||||| || |||||| | ||||||| |||||||| || |      | ||||||||||| ||||||||||||||||| |||  |||||    
T  41508254 actttttgaatgtttttacaaatataccctcataaaaaattgtgaagcattaaatacacccactaatattaaaaagacaaacattaaataaggggtaaaa 41508155  T
Q  525 aagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattgaaaatttt 604  Q
    |||||||||||   |||| |  |||||||||||| |||| |||||||||||   |||||||||||||| |||||||||||    
T  41508154 aagtcttttaagcaataactacaccttaaaaattgtgatattttcttatatttaggaccaaatttttttttgaaaatttt 41508075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 434 - 630
Target Start/End: Original strand, 10599747 - 10599949
Alignment:
Q  434 ttttgaatgtttttataattatacctttataaaaatttgtgaagtataa------ctcactaatattagaaagacaaacattaaatgaggattaaaaaag 527  Q
    ||||||||| ||||| || |||||| | |||||| |||||||||||| |      | ||||| ||||| ||||| ||||||||||||| | ||| |||||    
T  10599747 ttttgaatgattttacaaatataccctcataaaattttgtgaagtattaaatatacacactattattaaaaagataaacattaaatgaaggttagaaaag 10599846  T
Q  528 tcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattgaaaattttcctataaataacaccggagggag 627  Q
    | ||| |||  |||||||||||| |||| || ||| ||||||||||| |  |||| |  |||||| || ||||||||| |||||||   ||||||| |||    
T  10599847 tttttcaaacaataaatgtacctcaaaagttgtgactttttcttataaataggacaatttttttttttaaaaattttcttataaatgggaccggagtgag 10599946  T
Q  628 tat 630  Q
    |||    
T  10599947 tat 10599949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 497 - 630
Target Start/End: Complemental strand, 42935536 - 42935403
Alignment:
Q  497 aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattg 596  Q
    |||||| ||||||||||||| |||| |||| |||||||||  ||||||||| || |||| || ||| ||||||||||| |  | ||||||     | |||    
T  42935536 aaagaccaacattaaatgagaattagaaaaatcttttaaacaataaatgtatctcaaaagttgtgactttttcttataaatagaaccaaaaaaaattttg 42935437  T
Q  597 aaaattttcctataaataacaccggagggagtat 630  Q
    ||||||||| |||| |||| ||||||||||||||    
T  42935436 aaaattttcttatatataagaccggagggagtat 42935403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 375 - 430
Target Start/End: Complemental strand, 14568578 - 14568523
Alignment:
Q  375 ctccggtaatttttataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat 430  Q
    |||||||  ||| |||||||||||||| || |||||||||||||||||||||||||    
T  14568578 ctccggtcctttatataagaaaagaaatcataaatcatcaaaaccaagacaatcat 14568523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 485 - 574
Target Start/End: Original strand, 14658828 - 14658917
Alignment:
Q  485 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatga-ttttttcttata 574  Q
    ||||| ||||| ||||| |||||||||| ||||||| ||||||||||||| ||  |||||  ||||| |||||||||| ||||||||||||    
T  14658828 cactagtattaaaaagataaacattaaacgaggattgaaaaagtcttttacatagtaaatacacctt-aaaattatgacttttttcttata 14658917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 586
Target Start/End: Complemental strand, 14568439 - 14568350
Alignment:
Q  497 aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaa 586  Q
    ||||| ||||||||||||||| ||| ||||||||||||||  |||||| || ||||||| ||   | |||||||||||||  ||||||||    
T  14568439 aaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaagttgaaactttttcttatatataggaccaaa 14568350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 534
Target Start/End: Complemental strand, 35333373 - 35333328
Alignment:
Q  489 aatattagaaagacaaacattaaatgaggattaaaaaagtctttta 534  Q
    ||||||| ||||||||||||||||||||| |||||||| |||||||    
T  35333373 aatattaaaaagacaaacattaaatgagggttaaaaaaatctttta 35333328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 576
Target Start/End: Complemental strand, 2195879 - 2195808
Alignment:
Q  505 acattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatata 576  Q
    ||||||||||| || || ||||||||||||||  |||| |  ||||||||| ||||||| ||||||||||||    
T  2195879 acattaaatgaagagtagaaaagtcttttaaacaataactacaccttaaaagttatgatattttcttatata 2195808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 480
Target Start/End: Complemental strand, 10409845 - 10409798
Alignment:
Q  433 tttttgaatgtttttataattatacctttataaaaatttgtgaagtat 480  Q
    ||||||||||||||||||| |||||| |  ||||||||||||||||||    
T  10409845 tttttgaatgtttttataaatataccctcttaaaaatttgtgaagtat 10409798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 430
Target Start/End: Complemental strand, 10409900 - 10409861
Alignment:
Q  391 aagaaaagaaaccaaaaatcatcaaaaccaagacaatcat 430  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  10409900 aagaaaagaaacaaaaaatcatcaaaaccaaaacaatcat 10409861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 480
Target Start/End: Complemental strand, 13777786 - 13777745
Alignment:
Q  439 aatgtttttataattatacctttataaaaatttgtgaagtat 480  Q
    ||||||||||||| ||||| || |||||||||||||||||||    
T  13777786 aatgtttttataaatatacgttcataaaaatttgtgaagtat 13777745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 17757477 - 17757554
Alignment:
Q  497 aaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata 574  Q
    |||||| | |||||||| ||| ||||||| |||||||||   ||||||||||||||||| || ||  |||||||||||    
T  17757477 aaagaccaccattaaattagggttaaaaatgtcttttaagcaataaatgtaccttaaaagttgtgtctttttcttata 17757554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 25536490 - 25536539
Alignment:
Q  431 actttttgaatgtttttataattatacctttataaaaatttgtgaagtat 480  Q
    ||||||| ||||||| ||||| || |||||||||||||||| ||||||||    
T  25536490 actttttaaatgtttgtataaatacacctttataaaaatttatgaagtat 25536539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 485 - 627
Target Start/End: Complemental strand, 54864018 - 54863874
Alignment:
Q  485 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacca 584  Q
    ||||||||||  |||||  |||||||||||||  ||| ||||| ||||||||  ||||||||||||||||| || ||| ||||||||||| |  ||||||    
T  54864018 cactaatattgaaaagatcaacattaaatgagagttagaaaagccttttaaacaataaatgtaccttaaaagttgtgactttttcttataaataggacca 54863919  T
Q  585 a--attttttattgaaaattttcctataaataacaccggagggag 627  Q
    |   |||||| |||||||||||| ||||||||  |||||||||||    
T  54863918 attttttttttttgaaaattttcttataaatagaaccggagggag 54863874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 388 - 555
Target Start/End: Original strand, 25376784 - 25376968
Alignment:
Q  388 tataagaaaagaaaccaaaaatcatcaaaaccaagacaatcat-----------actttttgaatgtttttataattatacctttataaaaatttgtgaa 476  Q
    ||||||||||||| | |||||||||||||||||||||||||||           | |||||||||||||||| || |||||| |  ||||||||||||||    
T  25376784 tataagaaaagaagcaaaaaatcatcaaaaccaagacaatcattagttgttgtaattttttgaatgtttttacaaatataccctcttaaaaatttgtgaa 25376883  T
Q  477 gtat------aactcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaa 555  Q
    ||||       |||||| ||||||  |||||  |||||||||||||| ||| ||||||||||||||  |||| | ||||||||||    
T  25376884 gtattaaatatactcacaaatattgaaaagatcaacattaaatgagggttagaaaagtcttttaaacaataattataccttaaaa 25376968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 431 - 531
Target Start/End: Original strand, 31707346 - 31707449
Alignment:
Q  431 actttttgaatgtttttataattatacctttataaaaatttgtgaagtata---actcactaatattagaaagacaaacattaaatgaggattaaaaaag 527  Q
    ||||||||||| |||||| || |||||| | |||||||||| ||||| |||   || ||||||||||| ||||||||||||||||| |||  || |||||    
T  31707346 actttttgaatatttttacaaatataccctcataaaaatttatgaagcatatacacccactaatattaaaaagacaaacattaaataaggggtagaaaag 31707445  T
Q  528 tctt 531  Q
    ||||    
T  31707446 tctt 31707449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 482 - 574
Target Start/End: Complemental strand, 21128193 - 21128101
Alignment:
Q  482 actcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata 574  Q
    |||||||||||| | ||||| |||||| |||||||| ||  ||||||||||||||  |||||| ||| |||||| ||||||  ||||||||||    
T  21128193 actcactaatataaaaaagataaacataaaatgagggttggaaaagtcttttaaaaaataaatatacattaaaagttatgacattttcttata 21128101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 54864064 - 54864029
Alignment:
Q  388 tataagaaaagaaaccaaaaatcatcaaaaccaaga 423  Q
    |||||||||||||| |||||||||||||||||||||    
T  54864064 tataagaaaagaaatcaaaaatcatcaaaaccaaga 54864029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 562
Target Start/End: Complemental strand, 18838845 - 18838769
Alignment:
Q  485 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatga 562  Q
    ||||||||||| ||||| || ||||||||||||  || ||||||||||||||  |||| | |||||||||| ||||||    
T  18838845 cactaatattaaaaagataatcattaaatgagg-gtagaaaagtcttttaaacaataattataccttaaaagttatga 18838769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 485 - 536
Target Start/End: Complemental strand, 68892 - 68841
Alignment:
Q  485 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaa 536  Q
    ||||||||||| || ||||||||||||||||||| |||||||||||||||||    
T  68892 cactaatattaaaacgacaaacattaaatgaggaataaaaaagtcttttaaa 68841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 610
Target Start/End: Complemental strand, 18705090 - 18704968
Alignment:
Q  488 taatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaat 587  Q
    |||||||| ||| | ||||||||||| | |  |||||||||||||||| | |||| |  ||||||||| ||||||| ||||||||||   |||||||||     
T  18705090 taatattaaaaacaaaaacattaaataaagggtaaaaaagtcttttaagtaataactacaccttaaaagttatgatgttttcttataatttggaccaaag 18704991  T
Q  588 tttttattgaaaattttcctata 610  Q
     |||| |||||||||||| ||||    
T  18704990 atttttttgaaaattttcttata 18704968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 631
Target Start/End: Original strand, 3629262 - 3629409
Alignment:
Q  484 tcactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggacc 583  Q
    |||||||||||| ||| |||  |||||||| |||  || ||||||||||||| | |||| |  ||||||||| || |||  |||||||||| | |||||     
T  3629262 tcactaatattaaaaatacagtcattaaattagggatacaaaagtcttttaagtaataactacaccttaaaagttgtgacattttcttataaattggaca 3629361  T
Q  584 aaattttttattgaaaattttcctataaataacaccggagggagtata 631  Q
    |||  |||| || ||||||||| ||||   || |||||||||||||||    
T  3629362 aaaactttttttaaaaattttcttatattaaagaccggagggagtata 3629409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 485 - 536
Target Start/End: Original strand, 11983635 - 11983686
Alignment:
Q  485 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaa 536  Q
    ||||||||||| ||||| |||||||||||||||  ||||||| |||||||||    
T  11983635 cactaatattaaaaagagaaacattaaatgaggggtaaaaaaatcttttaaa 11983686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 574
Target Start/End: Complemental strand, 17686308 - 17686237
Alignment:
Q  504 aacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatga-ttttttcttata 574  Q
    ||||||||| ||||||| ||||||||||||| ||  |||||  ||||||||| |||||| ||||||||||||    
T  17686308 aacattaaaggaggattgaaaaagtcttttatatagtaaatacaccttaaaagttatgacttttttcttata 17686237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 574
Target Start/End: Original strand, 551 - 640
Alignment:
Q  485 cactaatattagaaagacaaacattaaatgaggattaaaaaagtcttttaaatcataaatgtaccttaaaaattatgattttttcttata 574  Q
    ||||||||||| || ||||| ||||||||||||  |||||||||||||||||  |||| |  ||||||||  || ||| |||||||||||    
T  551 cactaatattaaaacgacaatcattaaatgagggataaaaaagtcttttaaacaataactacaccttaaatgttgtgactttttcttata 640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 630
Target Start/End: Original strand, 38931 - 39031
Alignment:
Q  530 ttttaaatcataaatgtaccttaaaaattatgattttttcttatatactggaccaaattttttattgaaaattttcctat-aaataacaccggagggagt 628  Q
    |||||||  |||||| || |||||||||| ||| ||||||||||| |   ||||||| ||||| |||| ||||||| ||| |||||| ||||||||||||    
T  38931 ttttaaacaataaatatatcttaaaaattgtgactttttcttataaataagaccaaacttttt-ttgagaattttcttataaaataagaccggagggagt 39029  T
Q  629 at 630  Q
    ||    
T  39030 at 39031  T

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