View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5166-Insertion-4 (Length: 614)

Name: NF5166-Insertion-4
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5166-Insertion-4
NF5166-Insertion-4
[»] chr7 (3 HSPs)
chr7 (115-525)||(13092974-13093388)
chr7 (6-87)||(13092887-13092968)
chr7 (278-314)||(13092170-13092206)
[»] chr6 (10 HSPs)
chr6 (205-428)||(16517936-16518158)
chr6 (543-611)||(16517815-16517883)
chr6 (115-191)||(30031691-30031767)
chr6 (527-566)||(24898242-24898281)
chr6 (534-566)||(24934832-24934864)
chr6 (534-566)||(30053592-30053624)
chr6 (316-363)||(30053775-30053822)
chr6 (525-563)||(30577561-30577599)
chr6 (450-486)||(16517883-16517919)
chr6 (534-566)||(29949699-29949731)
[»] chr4 (1 HSPs)
chr4 (534-566)||(44262395-44262427)
[»] chr8 (1 HSPs)
chr8 (534-563)||(9782707-9782736)
[»] chr3 (1 HSPs)
chr3 (527-563)||(24226988-24227024)


Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 115 - 525
Target Start/End: Original strand, 13092974 - 13093388
Alignment:
Q  115 tttatggtttaaaaactgaaccttttccaaatagtttctgtattagtacataatcattttccctccttaatccttagtgtcatgttatcagcaaaatatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13092974 tttatggtttaaaaactgaaccttttccaaatagtttctgtattagtacataatcattttccctccttaatccttagtgtcatgttatcagaaaaatatt 13093073  T
Q  215 cctttatttcttaaaagattttgtcgaaaactttctgttgaaatagtcagctttctgttgaaaactttaataaaaaactaaattgaaagtgtagtacatc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||    
T  13093074 cctttatttcttaaaagattttgtcgaaaactttctgttgaaatagtcagctttctgttgaaaactttaataaaacactaaattgaaagtgtagtccgtc 13093173  T
Q  315 gttcttgtcattttcgaacaaaacaca--aataagagtttcatatcttacatgttacatcgttaggggtgcaatcgtcggtcttcaaatttttcaagttc 412  Q
    |||||||||||||| ||||||||||||  |  ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||      
T  13093174 gttcttgtcatttttgaacaaaacacaacacaaagagtttcatatgttacatgttacatcgttaggggtgcaatcgttggtcttcaaatttttcaagtag 13093273  T
Q  413 ggacaatgcttcattagac--nnnnnnnnnnnnnnnnncctctgtacaaagcctatcaatcatcatagtatacatccttacatcaaaatgataattgttg 510  Q
     ||||||||||||||| ||                   ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13093274 agacaatgcttcattaaacaaaaactaaaacaaaaaaacctttttacaaagcctatcaatcatcatagtatacatccttacatcaaaatgataattgttg 13093373  T
Q  511 attagaagtatcata 525  Q
    |||||||||||||||    
T  13093374 attagaagtatcata 13093388  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 13092887 - 13092968
Alignment:
Q  6 cactaatggtgtttgttgaaatatgatcataatgtagactaaaaatttggcatatataatgttcactgtaaattgtagatac 87  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13092887 cactaatggtgtttgttgaaatatgatcataaagtagactaaaaatttggcatatataatgttcactgtaaattgttgatac 13092968  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 13092206 - 13092170
Alignment:
Q  278 actttaataaaaaactaaattgaaagtgtagtacatc 314  Q
    |||||||||||||||||||||||||||||||| ||||    
T  13092206 actttaataaaaaactaaattgaaagtgtagtccatc 13092170  T

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Target: chr6 (Bit Score: 184; Significance: 3e-99; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 205 - 428
Target Start/End: Complemental strand, 16518158 - 16517936
Alignment:
Q  205 gcaaaatattcctttatttcttaaaagattttgtcgaaaactttctgttgaaatagtcagctttctgttgaaaactttaataaaaaactaaattgaaagt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16518158 gcaaaatattcctttatttcttaaaagattttgtcgaaaactttctgttgaaatagtcagctttctgttgaaaactttaataaaacactaaattgaaagt 16518059  T
Q  305 gtagtacatcgttcttgtcattttcgaacaaaacacaaataagagtttcatatcttacatgttacatcgttaggggtgcaatcgtcggtcttcaaatttt 404  Q
    ||||| | ||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| ||| ||||||||||||||    
T  16518058 gtagtccgtcgttctagtcattttcgaacaaaacacaaa-aagagtttcatatgttacatgttacatcgttatgggtgcaaccgttggtcttcaaatttt 16517960  T
Q  405 tcaagttcggacaatgcttcatta 428  Q
    ||||||||||||||||||||||||    
T  16517959 tcaagttcggacaatgcttcatta 16517936  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 543 - 611
Target Start/End: Complemental strand, 16517883 - 16517815
Alignment:
Q  543 cttaagtcttccatttttgcataggcattaacaagtaatgtctatttatacatgtctcgctgagttctc 611  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  16517883 cttaagtctttcatttttgcataggcattaacaagtattgtctatttatacatgtttcgctgagttctc 16517815  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 30031691 - 30031767
Alignment:
Q  115 tttatggtttaaaaactgaaccttttccaaatagtttctgtattagtacataatcattttccctccttaatccttag 191  Q
    ||||||||||||||| |||| ||||| ||  || ||||| |||||||||||||| ||||| ||||||||||||||||    
T  30031691 tttatggtttaaaaagtgaatctttttcagttattttctctattagtacataatgatttttcctccttaatccttag 30031767  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 527 - 566
Target Start/End: Complemental strand, 24898281 - 24898242
Alignment:
Q  527 aaacctattgtgcatccttaagtcttccatttttgcatag 566  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  24898281 aaacctcttgtgcatccttaagtcttccatttttgcatag 24898242  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 566
Target Start/End: Complemental strand, 24934864 - 24934832
Alignment:
Q  534 ttgtgcatccttaagtcttccatttttgcatag 566  Q
    |||||||||||||||||||||||||||||||||    
T  24934864 ttgtgcatccttaagtcttccatttttgcatag 24934832  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 566
Target Start/End: Complemental strand, 30053624 - 30053592
Alignment:
Q  534 ttgtgcatccttaagtcttccatttttgcatag 566  Q
    |||||||||||||||||||||||||||||||||    
T  30053624 ttgtgcatccttaagtcttccatttttgcatag 30053592  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 30053822 - 30053775
Alignment:
Q  316 ttcttgtcattttcgaacaaaacacaaataagagtttcatatcttaca 363  Q
    |||||||| |||||||||||| |||||||||||||||| ||| |||||    
T  30053822 ttcttgtcgttttcgaacaaagcacaaataagagtttcgtatgttaca 30053775  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 563
Target Start/End: Original strand, 30577561 - 30577599
Alignment:
Q  525 aaaaacctattgtgcatccttaagtcttccatttttgca 563  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  30577561 aaaaatctcttgtgcatccttaagtcttccatttttgca 30577599  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 16517919 - 16517883
Alignment:
Q  450 ctctgtacaaagcctatcaatcatcatagtatacatc 486  Q
    |||| |||||||| |||||||||||||||||||||||    
T  16517919 ctctttacaaagcgtatcaatcatcatagtatacatc 16517883  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 566
Target Start/End: Original strand, 29949699 - 29949731
Alignment:
Q  534 ttgtgcatccttaagtcttccatttttgcatag 566  Q
    ||||||||||| |||||||||||||||||||||    
T  29949699 ttgtgcatcctcaagtcttccatttttgcatag 29949731  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 566
Target Start/End: Original strand, 44262395 - 44262427
Alignment:
Q  534 ttgtgcatccttaagtcttccatttttgcatag 566  Q
    |||||||||||||||||||||||||||||||||    
T  44262395 ttgtgcatccttaagtcttccatttttgcatag 44262427  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 563
Target Start/End: Complemental strand, 9782736 - 9782707
Alignment:
Q  534 ttgtgcatccttaagtcttccatttttgca 563  Q
    ||||||||||||||||||||||||||||||    
T  9782736 ttgtgcatccttaagtcttccatttttgca 9782707  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 24227024 - 24226988
Alignment:
Q  527 aaacctattgtgcatccttaagtcttccatttttgca 563  Q
    |||||| |||||||||| |||||||||||||||||||    
T  24227024 aaacctcttgtgcatccctaagtcttccatttttgca 24226988  T

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