View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5166-Insertion-5 (Length: 508)

Name: NF5166-Insertion-5
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5166-Insertion-5
NF5166-Insertion-5
[»] chr3 (3 HSPs)
chr3 (8-504)||(45382702-45383208)
chr3 (163-252)||(50084778-50084869)
chr3 (421-467)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (416-496)||(27661703-27661783)
chr6 (416-453)||(26650237-26650274)
chr6 (416-453)||(26756205-26756242)
chr6 (412-452)||(12627824-12627864)
chr6 (416-456)||(29449688-29449728)
chr6 (341-391)||(8148268-8148318)
chr6 (344-397)||(20809178-20809231)
chr6 (416-445)||(28783014-28783043)
chr6 (398-455)||(34057962-34058019)
chr6 (342-378)||(29670971-29671007)
chr6 (419-455)||(30537508-30537544)
chr6 (344-392)||(31811989-31812037)
[»] chr1 (5 HSPs)
chr1 (148-246)||(31686728-31686828)
chr1 (98-251)||(25101927-25102080)
chr1 (407-452)||(264615-264660)
chr1 (356-396)||(27835482-27835522)
chr1 (416-452)||(43609830-43609866)
[»] chr5 (7 HSPs)
chr5 (191-245)||(27803033-27803089)
chr5 (416-455)||(28136673-28136712)
chr5 (148-252)||(41978263-41978369)
chr5 (148-216)||(16265448-16265516)
chr5 (416-453)||(645342-645379)
chr5 (407-452)||(11601688-11601733)
chr5 (344-392)||(12478334-12478382)
[»] chr7 (4 HSPs)
chr7 (416-456)||(43160491-43160531)
chr7 (407-454)||(10893872-10893919)
chr7 (416-458)||(650524-650566)
chr7 (416-452)||(18750887-18750923)
[»] chr8 (7 HSPs)
chr8 (349-391)||(14229600-14229642)
chr8 (416-456)||(32691750-32691790)
chr8 (189-242)||(40688136-40688191)
chr8 (407-455)||(41686804-41686852)
chr8 (189-252)||(31344424-31344487)
chr8 (164-242)||(7620090-7620172)
chr8 (407-455)||(31681833-31681881)
[»] chr2 (2 HSPs)
chr2 (362-458)||(9956949-9957045)
chr2 (165-252)||(9151330-9151417)
[»] chr4 (4 HSPs)
chr4 (416-466)||(10164460-10164510)
chr4 (416-454)||(28890768-28890806)
chr4 (412-448)||(29388374-29388410)
chr4 (416-456)||(45615427-45615467)


Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 8 - 504
Target Start/End: Complemental strand, 45383208 - 45382702
Alignment:
Q  8 gtaacatatttatcaaatgtgttatttaagggtctatttacttcgtaaacacattttctattttcatttatcaaatgagccattctgattgagagaagat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  45383208 gtaacatatttatcaaatgtgttatttaagggtctatttacttcgtaaacacgttttctattttcatttatcaaatgagccattttgattgagagaagat 45383109  T
Q  108 taaatgctaactagggatgacacatttcaagaaatgacaaaaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaa 207  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45383108 taaatgctaactagggatgacacatttcaagaaataacaaaaaatagctcatttaacattttcattgtttccgaaagtacaacacaattattcacttcaa 45383009  T
Q  208 gagtcttttctcattgttaacaagtaaaagtaacac-aaaatttagnnnnnnnnnnnntaagccgtaattctgtatgacaattaagtttcatagaagtgg 306  Q
    |||||||||||||||||||||||||||||||||||| |||||||||            ||||||||||||||||||||||| ||||||||||||||||||    
T  45383008 gagtcttttctcattgttaacaagtaaaagtaacacaaaaatttagaaaaataaaaaataagccgtaattctgtatgacaa-taagtttcatagaagtgg 45382910  T
Q  307 agaaagcaaaggaagtgactaattggtaaataatgaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtc--- 403  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||       
T  45382909 agaaagcaaaggaattgactaattggtaaataatgaactttgtagcaca-atacttctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctga 45382811  T
Q  404 --------tgtcaccaacatatgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgtt 495  Q
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||    
T  45382810 caccaacatgtcaccgacatatgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgaatgtcagtgtgaagtccagtgtt 45382711  T
Q  496 catgtctct 504  Q
    |||||||||    
T  45382710 catgtctct 45382702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 50084869 - 50084778
Alignment:
Q  163 acattttcattgtttccgaaagtacaacacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaaaatttag 252  Q
    |||||||||||||||| | || | |||  ||||||||||| ||||||||||  |||||| |||||||||||||||| ||| ||||| |||||    
T  50084869 acattttcattgtttctggaaattcaaggcaattgttcacatcaagagtctcctttctccttgttaacaagtaaaattaatacaaattttag 50084778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 467
Target Start/End: Complemental strand, 47362604 - 47362558
Alignment:
Q  421 attacattcaaatatgttattttcttaaattactactgatgttgacg 467  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  47362604 attacattcaattatgtaattttcttaaattattactgatgttgacg 47362558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 416 - 496
Target Start/End: Complemental strand, 27661783 - 27661703
Alignment:
Q  416 atgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttc 496  Q
    ||||||||||||| |||||| |||||||||||||||||||   |||||||||||| ||||| ||||| |||| ||||||||    
T  27661783 atgtgattacattgaaatatattattttcttaaattactatcaatgttgacgaatcagtgttagtgtcgagttcggtgttc 27661703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 453
Target Start/End: Original strand, 26650237 - 26650274
Alignment:
Q  416 atgtgattacattcaaatatgttattttcttaaattac 453  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650237 atgtgattacattcaaatatgttattttcttaaattac 26650274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 416 - 453
Target Start/End: Original strand, 26756205 - 26756242
Alignment:
Q  416 atgtgattacattcaaatatgttattttcttaaattac 453  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756205 atgtgattacattcaaatatgttattttcttaaattac 26756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 452
Target Start/End: Original strand, 12627824 - 12627864
Alignment:
Q  412 acatatgtgattacattcaaatatgttattttcttaaatta 452  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  12627824 acatatatgattacattgaaatatgttattttcttaaatta 12627864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 29449728 - 29449688
Alignment:
Q  416 atgtgattacattcaaatatgttattttcttaaattactac 456  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  29449728 atgtgattacattcaattatgttattttctgaaattactac 29449688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 391
Target Start/End: Original strand, 8148268 - 8148318
Alignment:
Q  341 gaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgaca 391  Q
    ||||| |||||||| |||||||| ||| ||||||||||| |||||||||||    
T  8148268 gaactatgtagcaccgacatttccgatggaaggcatgtctggtgtccgaca 8148318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 20809178 - 20809231
Alignment:
Q  344 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtc 397  Q
    ||||||||||  |||| ||  |||||||||||||||||||||||||||| ||||    
T  20809178 ctttgtagcatcgacactttggatcgaaggcatgtccggtgtccgacatgtgtc 20809231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 445
Target Start/End: Original strand, 28783014 - 28783043
Alignment:
Q  416 atgtgattacattcaaatatgttattttct 445  Q
    ||||||||||||||||||||||||||||||    
T  28783014 atgtgattacattcaaatatgttattttct 28783043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 455
Target Start/End: Complemental strand, 34058019 - 34057962
Alignment:
Q  398 tgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattacta 455  Q
    |||||||| |||| ||| ||||||||||| |||| ||||| ||||||||| |||||||    
T  34058019 tgtgtctgacaccgacacatgtgattacagtcaattatgtcattttcttatattacta 34057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 29671007 - 29670971
Alignment:
Q  342 aactttgtagcacagacatttctgatcgaaggcatgt 378  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  29671007 aactttgtaccaccgacatttctgatcgaaggcatgt 29670971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 455
Target Start/End: Complemental strand, 30537544 - 30537508
Alignment:
Q  419 tgattacattcaaatatgttattttcttaaattacta 455  Q
    |||| |||||||| |||||||||||||||||||||||    
T  30537544 tgataacattcaattatgttattttcttaaattacta 30537508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 31812037 - 31811989
Alignment:
Q  344 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 392  Q
    ||||||||||| ||||  ||||||| ||||||||||| |||||||||||    
T  31812037 ctttgtagcactgacacctctgatcaaaggcatgtccagtgtccgacat 31811989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 31686828 - 31686728
Alignment:
Q  148 aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaa 245  Q
    ||||||| || ||| |||||||||||||||  | || | ||| ||||| |||||||||||||||||  |||||| |||||||||||||||| ||||||||    
T  31686828 aaaatagttcttttgacattttcattgttttaggaaatgcaagacaatcgttcacttcaagagtctcttttctccttgttaacaagtaaaactaacacaa 31686729  T
Q  246 a 246  Q
    |    
T  31686728 a 31686728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 251
Target Start/End: Complemental strand, 25102080 - 25101927
Alignment:
Q  98 gagagaagattaaatgctaactagggatgacacatttcaagaaatgacaaaaaatagctcatttaacattttcattgtttccgaaagtacaacacaattg 197  Q
    |||||||||| |||||||| ||||||| ||  || |||| ||||  |  ||||||||||||||   |||||||||| |||||  || ||||| |||| ||    
T  25102080 gagagaagataaaatgctagctagggacgatgcacttca-gaaaaaaataaaaatagctcattaggcattttcattatttccagaaatacaagacaaatg 25101982  T
Q  198 ttcacttcaagagtct-tttctcattgttaacaagtaaaagtaacacaaaattta 251  Q
    ||| || ||||||||| |||||| ||||||| |||||||| | ||||||| ||||    
T  25101981 ttccctccaagagtctctttctccttgttaagaagtaaaacttacacaaatttta 25101927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 452
Target Start/End: Complemental strand, 264660 - 264615
Alignment:
Q  407 caccaacatatgtgattacattcaaatatgttattttcttaaatta 452  Q
    |||||||| ||||||||||||| || ||||||| ||||||||||||    
T  264660 caccaacacatgtgattacatttaagtatgttactttcttaaatta 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 27835522 - 27835482
Alignment:
Q  356 gacatttctgatcgaaggcatgtccggtgtccgacatttgt 396  Q
    |||| ||||||| ||||||||||| ||||||||||||||||    
T  27835522 gacacttctgattgaaggcatgtctggtgtccgacatttgt 27835482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 452
Target Start/End: Original strand, 43609830 - 43609866
Alignment:
Q  416 atgtgattacattcaaatatgttattttcttaaatta 452  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  43609830 atgtgattacattcaattatgttattttctcaaatta 43609866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 27803033 - 27803089
Alignment:
Q  191 acaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaacacaa 245  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||| ||||||||    
T  27803033 acaattgttcacttcaagagtctcttttctccttgttaacaagtaaaactaacacaa 27803089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 455
Target Start/End: Complemental strand, 28136712 - 28136673
Alignment:
Q  416 atgtgattacattcaaatatgttattttcttaaattacta 455  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28136712 atgtgattacattgaaatatgttattttcttaaattacta 28136673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 252
Target Start/End: Original strand, 41978263 - 41978369
Alignment:
Q  148 aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagag--tcttttctcattgttaacaagtaaaagtaacacaa 245  Q
    ||||||| || ||| |||||||||||||||||| || | ||| |||||| |||||||||||||  |||| |||  ||| ||||||||||||  |||||||    
T  41978263 aaaatagttcttttgacattttcattgtttccggaaatgcaaaacaattcttcacttcaagagcctcttatcttcttgctaacaagtaaaaacaacacaa 41978362  T
Q  246 aatttag 252  Q
    | |||||    
T  41978363 attttag 41978369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 16265448 - 16265516
Alignment:
Q  148 aaaatagctcatttaacattttcattgtttccgaaagtacaacacaattgttcacttcaagagtctttt 216  Q
    |||||||||  ||| |||||||||||||||| | || | ||| |||| |||||||||||||||||||||    
T  16265448 aaaatagctattttgacattttcattgtttctggaaatgcaagacaaatgttcacttcaagagtctttt 16265516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 645379 - 645342
Alignment:
Q  416 atgtgattacattcaaatatgttattttcttaaattac 453  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  645379 atgtgattacattcaattatgtcattttcttaaattac 645342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 452
Target Start/End: Complemental strand, 11601733 - 11601688
Alignment:
Q  407 caccaacatatgtgattacattcaaatatgttattttcttaaatta 452  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||    
T  11601733 caccaacatatgtgattacattcaattaatttagtttcttaaatta 11601688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 12478382 - 12478334
Alignment:
Q  344 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 392  Q
    ||||||||||| |||||||||||| |||||| |||| |||||| |||||    
T  12478382 ctttgtagcaccgacatttctgatggaaggcgtgtctggtgtctgacat 12478334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 43160531 - 43160491
Alignment:
Q  416 atgtgattacattcaaatatgttattttcttaaattactac 456  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43160531 atgtgattacattcaattatgttattttcttaaattactac 43160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 407 - 454
Target Start/End: Original strand, 10893872 - 10893919
Alignment:
Q  407 caccaacatatgtgattacattcaaatatgttattttcttaaattact 454  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  10893872 caccaacacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 458
Target Start/End: Complemental strand, 650566 - 650524
Alignment:
Q  416 atgtgattacattcaaatatgttattttcttaaattactactg 458  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||    
T  650566 atgtgattgcattcaattatgtcattttcttaaattactactg 650524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 452
Target Start/End: Complemental strand, 18750923 - 18750887
Alignment:
Q  416 atgtgattacattcaaatatgttattttcttaaatta 452  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  18750923 atgtgattacattcaattatgtcattttcttaaatta 18750887  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 14229642 - 14229600
Alignment:
Q  349 tagcacagacatttctgatcgaaggcatgtccggtgtccgaca 391  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  14229642 tagcactgacacttctgatcgaaggcatgtccggtgtccgaca 14229600  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 32691790 - 32691750
Alignment:
Q  416 atgtgattacattcaaatatgttattttcttaaattactac 456  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  32691790 atgtgattacattcaattatgtcattttcttaaattactac 32691750  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 40688191 - 40688136
Alignment:
Q  189 acacaattgttcacttcaagagtct--tttctcattgttaacaagtaaaagtaaca 242  Q
    |||||||||||||||||||||||||  | ||||||||||| ||||||||| |||||    
T  40688191 acacaattgttcacttcaagagtctagtatctcattgttaccaagtaaaattaaca 40688136  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 455
Target Start/End: Original strand, 41686804 - 41686852
Alignment:
Q  407 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 455  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||||||    
T  41686804 caccaacacatgtgattagactcaactatgttattttcttaaattacta 41686852  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 31344424 - 31344487
Alignment:
Q  189 acacaattgttcacttcaagagtcttttctcattgttaacaagtaaaagtaacacaaaatttag 252  Q
    |||||| ||||||||||||||||||| |||| |||| |  |||||||| ||||||||| |||||    
T  31344424 acacaagtgttcacttcaagagtcttatctctttgtcaggaagtaaaattaacacaaactttag 31344487  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 7620090 - 7620172
Alignment:
Q  164 cattttcattgtttccgaaagtacaacacaattgttcacttcaagagtct----tttctcattgttaacaagtaaaagtaaca 242  Q
    |||||||||| |||  |||| | ||| ||||||||| |||||||||||||    |||||| |||||||||||||||| |||||    
T  7620090 cattttcattatttttgaaaatgcaagacaattgttaacttcaagagtctctcttttctccttgttaacaagtaaaactaaca 7620172  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 455
Target Start/End: Original strand, 31681833 - 31681881
Alignment:
Q  407 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 455  Q
    |||| ||| |||||||| ||||||| ||||| |||||||||||||||||    
T  31681833 caccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 458
Target Start/End: Original strand, 9956949 - 9957045
Alignment:
Q  362 tctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattactactg 458  Q
    ||||||| ||||||||||||||||| ||||| |||| ||||| | |||  ||| |||| ||||| ||||||||  ||||||| | |||||| |||||    
T  9956949 tctgatcaaaggcatgtccggtgtctgacatgtgtcggtgtccggcacggacacatgtcattacgttcaaataatttattttgtcaaattattactg 9957045  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 9151330 - 9151417
Alignment:
Q  165 attttcattgtttccgaaagtacaacacaattgttcacttcaagagtcttttctcattgttaacaagtaaaagtaacacaaaatttag 252  Q
    |||||||| ||||||  || | ||| ||||||||||||||||||||||||||||| || ||| || |||  | ||||||||| |||||    
T  9151330 attttcatcgtttccagaaatgcaagacaattgttcacttcaagagtcttttctctttattaccatgtaggaataacacaaattttag 9151417  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 466
Target Start/End: Complemental strand, 10164510 - 10164460
Alignment:
Q  416 atgtgattacattcaaatatgttattttcttaaattactactgatgttgac 466  Q
    |||||||||||||||| ||||  |||||||||||||||||| | |||||||    
T  10164510 atgtgattacattcaattatgccattttcttaaattactaccggtgttgac 10164460  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 454
Target Start/End: Complemental strand, 28890806 - 28890768
Alignment:
Q  416 atgtgattacattcaaatatgttattttcttaaattact 454  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  28890806 atgtgattgcattcaattatgttattttcttaaattact 28890768  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 448
Target Start/End: Original strand, 29388374 - 29388410
Alignment:
Q  412 acatatgtgattacattcaaatatgttattttcttaa 448  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  29388374 acatatgtgattacattcaattatgtcattttcttaa 29388410  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 456
Target Start/End: Original strand, 45615427 - 45615467
Alignment:
Q  416 atgtgattacattcaaatatgttattttcttaaattactac 456  Q
    |||||||||| ||||| ||||| ||||||||||||||||||    
T  45615427 atgtgattacgttcaattatgtcattttcttaaattactac 45615467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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