View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166-Insertion-6 (Length: 461)
Name: NF5166-Insertion-6
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166-Insertion-6 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 7 - 461
Target Start/End: Original strand, 48099429 - 48099883
Alignment:
| Q |
7 |
atataattaggtgggctgactacccgatctccacttgattcaatggtgttaaactcattcatgaacattttgatttctggatcaagatggtaagctgttg |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48099429 |
atataattaggtgggctgactacccgatctccacttgattcaatggtgttaaactcattcatgaacattttgatttctggatcaagatggtaagctgttg |
48099528 |
T |
|
| Q |
107 |
aataatatattggcgaagcattttcgccgagtttgttctcaaaaaagtggtagtggacattctcattcacaacgtcccatgcaatcagttgtcctctata |
206 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48099529 |
aataatatattggcgaggcattttcgccgagtttgttctcaaaaaagtggtagtggacattctcattcacaacgtcccatgcaatcagttgtcctctata |
48099628 |
T |
|
| Q |
207 |
ccttgaaaccacagatcttattctttttgcagccgcttttcgtaattcttcaggagataggaacttaacccatttaggctgaaaagtttcatcgtcccag |
306 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48099629 |
ccttgaaaccacagatcttattctttttgcagccgcttttcgtaattcttcaggagataggaacttaacccatttaggctgaaaagtttcatcgtcccag |
48099728 |
T |
|
| Q |
307 |
aaaacggtatgacctctgacagaaatgccattttctttggcgaatttcatcatggcatctgggatagtatagttttcctggccttgaaatctctctgtac |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48099729 |
aaaacggtatgacctctgacagaaatgccattttctttggcgaatttcatcatggcatctgggatagtatagttttcctggccttgaaatctctctgtac |
48099828 |
T |
|
| Q |
407 |
tataccacttcatctcattagtaaaagctgtgtacttgaatcttgacacaaacca |
461 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48099829 |
tataccacttcatctcattagtaaaagctgtgtacttgaatcttgacacaaacca |
48099883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 44 - 461
Target Start/End: Original strand, 48066521 - 48066938
Alignment:
| Q |
44 |
attcaatggtgttaaactcattcatgaacattttgatttctggatcaagatggtaagctgttgaataatatattggcgaagcattttcgccgagtttgtt |
143 |
Q |
| |
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|||||||||||||||| |||||||| ||||| || | | |||||||||| ||| |||||||||||||||| || || ||||||||||||||||||| |
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| T |
48066521 |
attcaatggtgttaaattcattcataaacatgctggtgttcggatcaagatagtacgctgttgaataatatactgcagaggcattttcgccgagtttgtc |
48066620 |
T |
|
| Q |
144 |
ctcaaaaaagtggtagtggacattctcattcacaacgtcccatgcaatcagttgtcctctataccttgaaaccacagatcttattctttttgcagccgct |
243 |
Q |
| |
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|||||||||| ||| ||||||||||| |||||||||||||||||||| | |||||| ||||| ||||||||||||||| | |||||||||||||||||| |
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| T |
48066621 |
ctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaattaattgtccactatatcttgaaaccacagatttcattctttttgcagccgct |
48066720 |
T |
|
| Q |
244 |
tttcgtaattcttcaggagataggaacttaacccatttaggctgaaaagtttcatcgtcccagaaaacggtatgacctctgacagaaatgccattttctt |
343 |
Q |
| |
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| |||||||||||||||||||||| |||| ||||||| |||||||| ||||||||||||| |||| || ||||||||||||||||||||||||||||| |
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| T |
48066721 |
tctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgtcccacaaaatggcatgacctctgacagaaatgccattttctt |
48066820 |
T |
|
| Q |
344 |
tggcgaatttcatcatggcatctgggatagtatagttttcctggccttgaaatctctctgtactataccacttcatctcattagtaaaagctgtgtactt |
443 |
Q |
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|||| ||||||| ||||||||| || ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
48066821 |
tggcaaatttcagcatggcatcaggaatagtatagttttcctggccttgaattttctctgtactataccacttcatctcattagtgaaagttgtgtactt |
48066920 |
T |
|
| Q |
444 |
gaatcttgacacaaacca |
461 |
Q |
| |
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|||||||||||||||||| |
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| T |
48066921 |
gaatcttgacacaaacca |
48066938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 52 - 461
Target Start/End: Original strand, 48062440 - 48062849
Alignment:
| Q |
52 |
gtgttaaactcattcatgaacattttgatttctggatcaagatggtaagctgttgaataatatattggcgaagcattttcgccgagtttgttctcaaaaa |
151 |
Q |
| |
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|||||| |||||||||||||||| || || ||||||||||||||||||| |||||| |||| || || ||||||| |||||| |||| |||||||| |
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| T |
48062440 |
gtgttatactcattcatgaacatgttcgttgtgggatcaagatggtaagctgctgaatagtatactgcagaggcatttttgccgaggttgtcctcaaaaa |
48062539 |
T |
|
| Q |
152 |
agtggtagtggacattctcattcacaacgtcccatgcaatcagttgtcctctataccttgaaaccacagatcttattctttttgcagccgcttttcgtaa |
251 |
Q |
| |
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||||| |||||||||||||||| || |||||||||||||||| ||||||| |||||||||| ||||| ||| | |||||||||||||| |||| |||||| |
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| T |
48062540 |
agtggaagtggacattctcatttaccacgtcccatgcaatcaattgtcctttataccttgagaccacggatttcattctttttgcagctgcttctcgtaa |
48062639 |
T |
|
| Q |
252 |
ttcttcaggagataggaacttaacccatttaggctgaaaagtttcatcgtcccagaaaacggtatgacctctgacagaaatgccattttctttggcgaat |
351 |
Q |
| |
|
||| |||||||| ||| || | |||||| ||| ||| ||||| |||||| |||| | |||||||||||||||| ||||||||||| || || ||| |
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|
| T |
48062640 |
ttcatcaggagacagggacaaatcccattcaggttgacgtctttcactgtcccacaaaatgttatgacctctgacagatatgccattttccttagcaaat |
48062739 |
T |
|
| Q |
352 |
ttcatcatggcatctgggatagtatagttttcctggccttgaaatctctctgtactataccacttcatctcattagtaaaagctgtgtacttgaatcttg |
451 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||| ||||| |||| |||||| |||||||||| |
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| T |
48062740 |
ttcagcatggcatctgggatagtatagttttcatggccttggattttctctgtactataccacttcatctcgttagtgaaagttgtgtatttgaatcttg |
48062839 |
T |
|
| Q |
452 |
acacaaacca |
461 |
Q |
| |
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|||||||||| |
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| T |
48062840 |
acacaaacca |
48062849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 33 - 461
Target Start/End: Original strand, 48106056 - 48106484
Alignment:
| Q |
33 |
atctccacttgattcaatggtgttaaactcattcatgaacattttgatttctggatcaagatggtaagctgttgaataatatattggcgaagcattttcg |
132 |
Q |
| |
|
||||||||| ||||||| || ||| |||||||||| |||| ||| ||||||||||||| | | |||| || |||| |||| | || |||||||| |
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| T |
48106056 |
atctccactatattcaatagtattatactcattcataaacaattttgtttctggatcaagctcatgagcttttaaatagtataattcagatgcattttca |
48106155 |
T |
|
| Q |
133 |
ccgagtttgttctcaaaaaagtggtagtggacattctcattcacaacgtcccatgcaatcagttgtcctctataccttgaaaccacagatcttattcttt |
232 |
Q |
| |
|
|| ||||||| |||| ||||||| | |||||||| |||||||| || ||||||||||||| || |||| |||||||| ||| |||||| ||||||| |
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|
| T |
48106156 |
cctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatgcaatcaattctcctttataccttttaacaacagattcgattcttt |
48106255 |
T |
|
| Q |
233 |
ttgcagccgcttttcgtaattcttcaggagataggaacttaacccatttaggctgaaaagtttcatcgtcccagaaaacggtatgacctctgacagaaat |
332 |
Q |
| |
|
|| || ||||| || ||||| || || |||| |||||||||||| ||| ||| | |||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
48106256 |
ttttcgcggctttgcgcaattcatcgggcgataaatacttaacccattcaggttgatatttttcatcgtcccagaaaatgttatgacctctgacagaaat |
48106355 |
T |
|
| Q |
333 |
gccattttctttggcgaatttcatcatggcatctgggatagtatagttttcctggccttgaaatctctctgtactataccacttcatctcattagtaaaa |
432 |
Q |
| |
|
||||| ||||| || |||| | ||| ||||||| |||||| |||||||| |||||| ||| | | |||||||||||||| ||||| ||||| || ||| |
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|
| T |
48106356 |
tccattatctttagcaaattctaacattgcatctgagatagtgtagttttcttggcctggaattatttctgtactataccatttcatttcattggtgaaa |
48106455 |
T |
|
| Q |
433 |
gctgtgtacttgaatcttgacacaaacca |
461 |
Q |
| |
|
| |||||| |||||||||||||||||||| |
|
|
| T |
48106456 |
gttgtgtatttgaatcttgacacaaacca |
48106484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 44 - 279
Target Start/End: Original strand, 50231161 - 50231396
Alignment:
| Q |
44 |
attcaatggtgttaaactcattcatgaacattttgatttctggatcaagatggtaagctgttgaataatatattggcgaagcattttcgccgagtttgtt |
143 |
Q |
| |
|
||||||||||||||||| | ||||| ||||| || | | | |||||||| |||||||||| ||||||||| || || ||||||| ||||||||||| |
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|
| T |
50231161 |
attcaatggtgttaaacacgttcataaacatgctggtgttcgaatcaagatagtaagctgttaaataatatactgcagaggcatttttgccgagtttgtc |
50231260 |
T |
|
| Q |
144 |
ctcaaaaaagtggtagtggacattctcattcacaacgtcccatgcaatcagttgtcctctataccttgaaaccacagatcttattctttttgcagccgct |
243 |
Q |
| |
|
||||||||| ||| |||||||||||| || ||||||||||||||||||| |||||| ||||| |||||||||| | || | |||||||||||||||||| |
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|
| T |
50231261 |
ctcaaaaaaccggttgtggacattctcgtttacaacgtcccatgcaatcaattgtccactatatcttgaaaccaaaaatttcattctttttgcagccgct |
50231360 |
T |
|
| Q |
244 |
tttcgtaattcttcaggagataggaacttaacccat |
279 |
Q |
| |
|
| |||||||||||||||||||||| |||||| |||| |
|
|
| T |
50231361 |
tctcgtaattcttcaggagatagggacttaagccat |
50231396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 96 - 266
Target Start/End: Complemental strand, 1019 - 849
Alignment:
| Q |
96 |
gtaagctgttgaataatatattggcgaagcattttcgccgagtttgttctcaaaaaagtggtagtggacattctcattcacaacgtcccatgcaatcagt |
195 |
Q |
| |
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|||| ||||| ||||||||| || || |||||||| |||||||||| || |||||| ||| |||||||||||| |||||||||||||||||||||| | |
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| T |
1019 |
gtaaactgttaaataatatactgcagaggcattttctccgagtttgtcctaaaaaaatcggttgtggacattctcgttcacaacgtcccatgcaatcaat |
920 |
T |
|
| Q |
196 |
tgtcctctataccttgaaaccacagatcttattctttttgcagccgcttttcgtaattcttcaggagatag |
266 |
Q |
| |
|
||||| ||||| ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
919 |
tgtccactatatcttgaaaccacagatttcattctttttgcagccgcttctcgtaattcttcaggagatag |
849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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