View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_high_12 (Length: 385)
Name: NF5166_high_12
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 367
Target Start/End: Complemental strand, 46126919 - 46126564
Alignment:
| Q |
13 |
aatattgcttacaattgtaccatctagctgacattctccaagagacacttgcagaatttttagaggcattaaccactcctaaagagtcagttttccacaa |
112 |
Q |
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| T |
46126919 |
aatattgcttacaattgtaccatctagctgacattctccaagagacacttgcagaatttttagaggcattaaccactcctaaagagtcagttttccacaa |
46126820 |
T |
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| Q |
113 |
tgatgtcaggaaagtgaagctctttcgctttctcaatagcccgcagacacgcgcaaaactcagcttccaaagccgaagcatgcccaacattttgggtaaa |
212 |
Q |
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| T |
46126819 |
tgatgtcaggaaagtgaagctctttcgctttctcaatagcccgcagacacgcgcaaaactcagcttccaaagccgaagcatgcccaacattttgggtaaa |
46126720 |
T |
|
| Q |
213 |
agctcccaaaaatttggcattatgatctctaataacaaacccaatggagccagcagatggactgtctatagaggagccatcacag-nnnnnnngacagtg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46126719 |
agctcccaaaaatttggcattatgatctctaataacaaacccaatggagccagcagatggactgtctatagaggagccatcacagtttattttgacagtg |
46126620 |
T |
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| Q |
312 |
ccaataggagggggaacccaactagtttgatgaacttgaacaatcctactagcttt |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46126619 |
ccaataggagggggaacccaactagtttgatgaacttgaacaatcctactagcttt |
46126564 |
T |
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