View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_high_13 (Length: 383)
Name: NF5166_high_13
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 106 - 364
Target Start/End: Original strand, 28277516 - 28277774
Alignment:
| Q |
106 |
tgtggatgattctaaagtgactattttctcgtaacatatttttaatgtcttgaatcaacacaacatgcttatgaaacttgtttgaagaagactcaacgag |
205 |
Q |
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| T |
28277516 |
tgtggatgattctaaagtggctattttctcgtaacatatttttaatgtcttgaatcaacaccacatgcttatgaaacttgtttgaagaagactcaatgag |
28277615 |
T |
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| Q |
206 |
tttgatccaaagtgaagaagcagtatagcagaccgagttgtgaatgctcataccctttataagagataaatcatgatgaatgacataaaactcaacttga |
305 |
Q |
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| T |
28277616 |
tttgatccaaagtgaagaagcagtataacagaccgagttgtgaatgctcatactctttacaagagataaatcatgatgaatgacatgaaactcaacttga |
28277715 |
T |
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| Q |
306 |
agaatgtatgttgattctgaattatgtcgtgataaactagcacgccacacatatgaaga |
364 |
Q |
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| T |
28277716 |
agaatgtatgttgattctgaattatgtcgtgataaactagcacgccacacatatgaaga |
28277774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 28277203 - 28277299
Alignment:
| Q |
10 |
tatttaacgagtgcctttataa-tgt-atttgttagcatgacctagtattaaatttgatccattaaaccgtcaaaatcaaagtttgaattgagtata |
104 |
Q |
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| T |
28277203 |
tatttaacaagtgcctttataaatgttatttgttagcatgatctaatattaaatttgatccattaaaccgtcaaaatcaaagtttgaattgagtata |
28277299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 8433922 - 8434028
Alignment:
| Q |
118 |
taaagtgactattttctcgtaacatatttttaatgtcttgaatcaacacaacatgcttatgaaacttgtttgaagaagactcaacgagtttgatccaaag |
217 |
Q |
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| T |
8433922 |
taaagtgaatattttctcttaacatatctttgatgtcttgcatcgacacaacatgctaatggagtttgtttggagaagactcaatgagattgatgtaaaa |
8434021 |
T |
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| Q |
218 |
tgaagaa |
224 |
Q |
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| T |
8434022 |
tgaagaa |
8434028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 12495382 - 12495436
Alignment:
| Q |
111 |
atgattctaaagtgactattttctcgtaacatatttttaatgtcttgaatcaaca |
165 |
Q |
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| T |
12495382 |
atgattctaaagcgaccattttcttgcaacatgtctttaatgtcttgaatcaaca |
12495436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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