View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_high_14 (Length: 363)
Name: NF5166_high_14
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 51844169 - 51844353
Alignment:
| Q |
7 |
gagatgaaatgttgaagataaatatagaacttggatggaaaaagggtacaaagttatattttttgggttagtaaacgacgtaccaggatctcctccgtct |
106 |
Q |
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| T |
51844169 |
gagaagaaatgttgaagataaatatagaacttggatggaaaaagggtacaaagttatattttttgggttagtaaacgacgtaccaggatctcctccgtct |
51844268 |
T |
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| Q |
107 |
gatctaagttttgtggtgatagagagaccgcatgctttattcaagaggggtggaaatggtttgataatgacccaaaagatatcac |
191 |
Q |
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| T |
51844269 |
gatctaagttctgtggtgatagagagaccgcatgctttattcaagaggggtggaaatggtttgataatgacccaaaagatatcac |
51844353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 244 - 346
Target Start/End: Original strand, 51844345 - 51844447
Alignment:
| Q |
244 |
agatatcacagtccatgtgactgatattgtgacaccatgctatcaaaaggtggtctatggtgatgttgtcccactttcaaaggatccaagtaaagggaga |
343 |
Q |
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| T |
51844345 |
agatatcacagtccatgtgactgatattgtgacaccatgctatcaaaaggtggtctatggtgatgttgtcccactttcaaaggatccaagtaaagggaga |
51844444 |
T |
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| Q |
344 |
aaa |
346 |
Q |
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| T |
51844445 |
aaa |
51844447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 51844736 - 51844670
Alignment:
| Q |
118 |
tgtggtgatagagagaccgcatgctttattcaagaggggtggaaatggtttgataatgacccaaaag |
184 |
Q |
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| T |
51844736 |
tgtggtgattgagagaccacatacttcattcaagagggatgaaaatggtttgatgattaccaaaaag |
51844670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 104 - 333
Target Start/End: Original strand, 16559740 - 16559969
Alignment:
| Q |
104 |
tctgatctaagttttgtggtgatagagagaccgcatgctttattcaagaggggtggaaatggtttgataatgacccaaaagatatcacttcttgaaactc |
203 |
Q |
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| T |
16559740 |
tctgatgtaatttttgtggtgaatgagagaccacatcctatattcaagagggacggaaaagatttgataatgaccgaaaagatatcacttctggaagctc |
16559839 |
T |
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| Q |
204 |
tcgtcgaaaaaactctcaacttgacaatcttggatggaagagatatcacagtccatgtgactgatattgtgacaccatgctatcaaaaggtggtctatgg |
303 |
Q |
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| T |
16559840 |
ttgttggtaagactctcaacataacaaccttggatggtcgacatatcacagttgaattggatgatattgtgacaccgggatatgaaaaggtggtcgctga |
16559939 |
T |
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| Q |
304 |
tgatgttgtcccactttcaaaggatccaag |
333 |
Q |
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| T |
16559940 |
tgaaggtatgccactttcaaaggatccaag |
16559969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 265
Target Start/End: Complemental strand, 1412380 - 1412243
Alignment:
| Q |
129 |
agagaccgcatgctttattcaagaggggtggaaatggtttgataatgacccaaaagatatcacttcttgaaactctcgtcgaaaaaactctcaacttgac |
228 |
Q |
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| T |
1412380 |
agagaccacttgctttattcattagggatgaaaatgatttgataatgacctagtagatatcatttcttgaagctctcgtcgaaaagactctctacttgac |
1412281 |
T |
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| Q |
229 |
aatc-ttggatggaagagatatcacagtccatgtgact |
265 |
Q |
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| T |
1412280 |
aaccttttgatgaaagaaatatcatagtccatgagact |
1412243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 1411857 - 1411926
Alignment:
| Q |
184 |
gatatcacttcttgaaactctcgtcgaaaaaactctcaacttgacaatcttggatggaagagatatcaca |
253 |
Q |
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| T |
1411857 |
gatatcacttattgaaactctcgaaggaaagactcttaacttgaaaattttggatgaaagagatatcaca |
1411926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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