View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_high_15 (Length: 359)
Name: NF5166_high_15
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 836216 - 836538
Alignment:
| Q |
20 |
actttccgattcccgtctaaataaaccggatagaaattcagaaacacaagtaaagaaggctggaagtgttcaatccaaacctaatccagttttaaagact |
119 |
Q |
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| T |
836216 |
actttccgattcccatctaaataaaccggataggaattcagaaacacaagtaaagaaggctggaagtgttcaatccaaacctaatccagttttaaagact |
836315 |
T |
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| Q |
120 |
agacatggatcgtcgtttcacatcaaagacgagtaccctcagactttttatggtaacttcagaaaattgaagtaactttagaaaatcgaaggacagcgaa |
219 |
Q |
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| T |
836316 |
agacatgaatcgtcgtttcacatcaaagacgagtaccctcagactttttatggtaacttcag----------taactttagaaaattgaaggacagcgaa |
836405 |
T |
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| Q |
220 |
ttcgaacgcacagaaagacattaagtttaacagaattgtacgtgatatttactattttatgtcactttgttttttcgcaatcgtgcaatattgcacagga |
319 |
Q |
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| T |
836406 |
ttcgaacgcacagaaagacattaagtttaacagaattgtacgtgatatttactattttatgtcactttgttttttcgcaatcgtgcaatattgcacatga |
836505 |
T |
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| Q |
320 |
tctttactactttagaaaataccgcactatatt |
352 |
Q |
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| T |
836506 |
tctttactactttagtaaataccgcactatatt |
836538 |
T |
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