View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_high_24 (Length: 264)
Name: NF5166_high_24
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_high_24 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 105 - 264
Target Start/End: Original strand, 44915134 - 44915293
Alignment:
| Q |
105 |
tttccccagcaggtttttgaaggggggttaaatcaacagtcagggggcactcaatttgcttctagtcagcaaggtatgaggttagtcgccaaggcacaac |
204 |
Q |
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| T |
44915134 |
tttccacagcaggtttttgaaggggggttaaatcaacagtcagggggcactcaatttgcttctagtcagcaaggcatgaggttagtcgccaaggcacaac |
44915233 |
T |
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| Q |
205 |
aatttgatacggaaagaatagacggtgcagggataaagggcaatttagacccacaacaag |
264 |
Q |
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| T |
44915234 |
aatttgatacagaaagaatagatggtgcagggataaagtgcaatttagacccacaacaag |
44915293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 7748841 - 7748986
Alignment:
| Q |
96 |
gttcagaaatttccccagcaggtttttgaaggggggttaaatcaacagtcagggggcactcaatttgcttctagtcagcaaggtatgaggttagtcgcca |
195 |
Q |
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| T |
7748841 |
gttcagaagtttccccagcagggttttgaaggggggttaaatcaagatacaggggctattcaatttgcttctggtcagcaaggcatgaggttagttgcca |
7748940 |
T |
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| Q |
196 |
aggcacaacaatttgatacggaaagaatagacggtgcagggataaa |
241 |
Q |
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| T |
7748941 |
aggaagaacaatttgaaatggaaagaatagatggtgcagggataaa |
7748986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 7749361 - 7749446
Alignment:
| Q |
13 |
attctacacaaaggcaacaacaggaacgcctagctgcaaaacggagatctaagtccgttcccaagaccccagcgatgagtgtagtt |
98 |
Q |
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| T |
7749361 |
attctacacaaaggcaacaacaggcacacctagctgcaaaacggagatctaattcccttcccaagacacctgcaatgagtggagtt |
7749446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 44915584 - 44915663
Alignment:
| Q |
20 |
acaaaggcaacaacaggaacgcctagctgcaaaacgga-gatctaagtccgttcccaagaccccagcgatgagtgtagtt |
98 |
Q |
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| T |
44915584 |
acaaaggcaacaacagacacacctagctgcaaaatggataatctaattcccttcccaagaccccaacaatgagtggagtt |
44915663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 2338760 - 2338904
Alignment:
| Q |
97 |
ttcagaaatttccccagcaggtttttgaaggggggttaaatcaacagtcagggggcactcaatttgcttctagtcagcaaggtatgaggttagtcgccaa |
196 |
Q |
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| T |
2338760 |
ttcagaagtttccccagcaggtttttgatgggggtttaaatcaagagacaggggctattcaattttcttctggtcagcaaggcatgaggttagttgataa |
2338859 |
T |
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| Q |
197 |
ggcacaacaatttgatacggaaagaatagacggtgcagggataaa |
241 |
Q |
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| T |
2338860 |
ggtagaccaatttgaaatggaaagaaaagatggtgcaaggataaa |
2338904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 2339246 - 2339331
Alignment:
| Q |
13 |
attctacacaaaggcaacaacaggaacgcctagctgcaaaacggagatctaagtccgttcccaagaccccagcgatgagtgtagtt |
98 |
Q |
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| T |
2339246 |
attctactcaaaggcaacaacaggcacacctagctgcaaaacggggatctaattcctttcccaagaccccatcaatgagtggagtt |
2339331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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