View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_high_27 (Length: 254)
Name: NF5166_high_27
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 44915339 - 44915494
Alignment:
| Q |
1 |
atttcccacagacaacctcgaatagtcctcagttatctaatgggatattacctcactcgctaatgctattatcttcaaaatctggtgaattttctaaggg |
100 |
Q |
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| T |
44915339 |
atttcccacagacaacctcgaatagtcctcagttatctaatgggatattacctcactcgctaatgctattatcttcaaaatctggtgaattttctaaggg |
44915438 |
T |
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| Q |
101 |
ttcagttggactaaagttttagaccgtcttcaatgaaaaatgcatctggagcattac |
157 |
Q |
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| T |
44915439 |
ttcagttggact-aagttctagaccgtcttcaatgaaaaatgcatctggagcattac |
44915494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 7749177 - 7749283
Alignment:
| Q |
24 |
agtcctcagttatctaatgggatattacctcactcgctaatgctattatcttcaaaatctggtgaattttctaagggttcagttggactaaagttttaga |
123 |
Q |
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| T |
7749177 |
agtcctcggttatctagtgggacgttacctcactcgcca------ttatcttcaaaatcaggtgaattttctaacggttcagttggac-ccagttttgga |
7749269 |
T |
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| Q |
124 |
ccgtcttcaatgaa |
137 |
Q |
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| T |
7749270 |
ccatcttcaatgaa |
7749283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 236
Target Start/End: Original strand, 44915543 - 44915573
Alignment:
| Q |
206 |
ctgcaatggcttcacatacagctgctgttgg |
236 |
Q |
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| T |
44915543 |
ctgcaatggcttcacatacagctgctgttgg |
44915573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 2339047 - 2339173
Alignment:
| Q |
24 |
agtcctcagttatctaatgggatattacctcactcgctaatgctattatcttcaaaatctggtgaattttctaagggttcagttggactaaagttttaga |
123 |
Q |
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| T |
2339047 |
agtcctcggttatctagtgggacattacctcactcgcta------ttatcttcaaaatctggtgaattttctaatggttcagttggac-caagttttgga |
2339139 |
T |
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| Q |
124 |
ccgtcttcaatgaaaaatgcatctggagcattac |
157 |
Q |
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| T |
2339140 |
ccatcttcagtgaacaatgcatcaggagcattac |
2339173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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