View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_high_28 (Length: 253)
Name: NF5166_high_28
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_high_28 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 32912684 - 32912448
Alignment:
| Q |
17 |
aagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaattt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32912684 |
aagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaattt |
32912585 |
T |
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| Q |
117 |
aagtgccttacgaattatctttttgcatccattaaagttagccccagaagcaggggctttggccttaaactccactccagcatatgtgtaggtccctttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32912584 |
aagtgccttacgaattatctttttgcatccattaaaattagccccagaagcaggggctttggccttaaactcctctccagcatatgtgtaggtccctttt |
32912485 |
T |
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| Q |
217 |
aagaaccaaaaataatcctatgttattggcatatcat |
253 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
32912484 |
aagaaccaaaaataatcctatgttattggcatatcat |
32912448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 32924657 - 32924459
Alignment:
| Q |
17 |
aagatgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaattt |
116 |
Q |
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||||||||| ||||||||| | |||||||| |||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
32924657 |
aagatgaagcagcaaaaagtattctctgtccacttcctcctccaccactccaaattccaccaaaagtgcaattctgatagggacatggataattcaattt |
32924558 |
T |
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| Q |
117 |
aagtgccttacgaattatctttttgcatccattaaagttagccccagaagcaggggctttggccttaaactccactccagcatatgtgtaggtcccttt |
215 |
Q |
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| T |
32924557 |
aagagcctcacgaactatctttttgcattttttaaaattggctccagaagcaggggcattggccttaaattcttctccagcatatgtgtatgtcccttt |
32924459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 32950302 - 32950171
Alignment:
| Q |
39 |
tttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatcttt |
138 |
Q |
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|||||| ||| |||| ||||| || ||||| || ||||||||| | || ||| ||| |||||||||| |||| ||||||||||||| ||||||||| | |
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| T |
32950302 |
tttctgcccacttcctcctccaccgttccatatcccaccaaaactacattttccataaggacatggatcattcactttaagtgccttaagaattatctct |
32950203 |
T |
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| Q |
139 |
ttgcatccattaaagttagccccagaagcagg |
170 |
Q |
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| T |
32950202 |
ttgcattcatcaaagttggggccagaagcagg |
32950171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 172
Target Start/End: Complemental strand, 32927366 - 32927244
Alignment:
| Q |
50 |
ttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccatt |
149 |
Q |
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|||| ||||| |||||||| || ||||||||||||||||| |||||||||||||| |||| |||||| ||||| || |||||| ||||||| ||| |
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| T |
32927366 |
ttcctcctccaccattccatatcccaccaaaagtgcaattcgaatagggacatggatcattcactttaagaaccttaagagttatctctttgcattcatc |
32927267 |
T |
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| Q |
150 |
aaagttagccccagaagcagggg |
172 |
Q |
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|||||| | ||||||| ||||| |
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| T |
32927266 |
aaagtttgagccagaagaagggg |
32927244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 32935623 - 32935506
Alignment:
| Q |
55 |
cctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatctttttgcatccattaaagt |
154 |
Q |
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||||| |||||||| ||||||| ||||||||| | |||||||||||||| |||| |||||| ||||| ||||||||| ||||||| ||||||||| |
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| T |
32935623 |
cctccaccattccatattccactgaaagtgcaactcgaatagggacatggatcattcactttaagaaccttaagaattatctctttgcattcattaaagt |
32935524 |
T |
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| Q |
155 |
tagccccagaagcagggg |
172 |
Q |
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| T |
32935523 |
ttgagccagaagaagggg |
32935506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 32943121 - 32942990
Alignment:
| Q |
39 |
tttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaagtgccttacgaattatcttt |
138 |
Q |
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|||||| ||| |||| ||||| || ||||| || ||||||||| | || || ||| |||||||||| |||| ||||||||||||| ||||||||| | |
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| T |
32943121 |
tttctgcccacttcctcctccaccgttccatatcccaccaaaactacatttcccataaggacatggatcattcactttaagtgccttaagaattatctct |
32943022 |
T |
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| Q |
139 |
ttgcatccattaaagttagccccagaagcagg |
170 |
Q |
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| T |
32943021 |
ttgcattcatcaaagttggagccagaagcagg |
32942990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 11824995 - 11824800
Alignment:
| Q |
20 |
atgaagaagcaaaaaggtgtttctgtccatttccccctccgccattccaaattccaccaaaagtgcaattttgatagggacatggatagttcaatttaag |
119 |
Q |
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|||||| ||||||||| | | |||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |
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| T |
11824995 |
atgaagcagcaaaaagttttctctgtccacttcctcctccaccattccaaattccaccaaaagtgcaattctgataaggacatggataattcaatttaag |
11824896 |
T |
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| Q |
120 |
tgccttacgaattatctttttgcatccattaaagttagccccagaagcaggggctttggccttaaactccactccagcatatgtgtaggtcccttt |
215 |
Q |
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|||| | ||| ||||||||||||| ||||| | || |||||||| |||| ||||||||||| || ||||||||||| |||| |||||||| |
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| T |
11824895 |
agcctgatgaactatctttttgcattttttaaaactggctccagaagctagggcattggccttaaattcttctccagcatatctgtatgtcccttt |
11824800 |
T |
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