View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5166_high_34 (Length: 238)

Name: NF5166_high_34
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5166_high_34
NF5166_high_34
[»] chr8 (15 HSPs)
chr8 (1-213)||(1969058-1969270)
chr8 (4-224)||(2007754-2007974)
chr8 (4-224)||(2004374-2004594)
chr8 (15-221)||(1965108-1965314)
chr8 (4-221)||(2014774-2014991)
chr8 (4-221)||(2018157-2018374)
chr8 (1-224)||(1963435-1963658)
chr8 (7-221)||(2436850-2437064)
chr8 (1-221)||(2011366-2011586)
chr8 (81-148)||(3770193-3770260)
chr8 (6-132)||(10201811-10201937)
chr8 (6-132)||(10208884-10209010)
chr8 (81-148)||(3707935-3708002)
chr8 (81-223)||(3777860-3778002)
chr8 (82-164)||(33005106-33005188)
[»] chr1 (2 HSPs)
chr1 (1-224)||(5902611-5902834)
chr1 (1-220)||(5906099-5906318)
[»] scaffold0288 (1 HSPs)
scaffold0288 (90-131)||(3516-3557)
[»] chr6 (14 HSPs)
chr6 (90-131)||(4461417-4461458)
chr6 (90-130)||(4622436-4622476)
chr6 (90-131)||(4557419-4557460)
chr6 (90-131)||(4592525-4592566)
chr6 (92-131)||(4490152-4490191)
chr6 (90-128)||(4266966-4267004)
chr6 (85-131)||(4299618-4299664)
chr6 (85-131)||(4626240-4626286)
chr6 (91-128)||(4493250-4493287)
chr6 (90-131)||(4506151-4506192)
chr6 (90-131)||(4585930-4585971)
chr6 (90-131)||(4613515-4613556)
chr6 (79-131)||(845007-845059)
chr6 (79-131)||(870291-870343)
[»] scaffold0184 (1 HSPs)
scaffold0184 (15-131)||(11571-11687)
[»] chr7 (2 HSPs)
chr7 (85-131)||(41511444-41511490)
chr7 (91-131)||(3086715-3086755)
[»] scaffold0477 (1 HSPs)
scaffold0477 (85-131)||(4483-4529)
[»] chr5 (1 HSPs)
chr5 (91-131)||(20155250-20155290)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1969270 - 1969058
Alignment:
Q  1 aggccttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1969270 aggccttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattcc 1969171  T
Q  101 agccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1969170 agccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctc 1969071  T
Q  201 caagaacccagat 213  Q
    |||||||||||||    
T  1969070 caagaacccagat 1969058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 2007754 - 2007974
Alignment:
Q  4 ccttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagc 103  Q
    |||||||||| |||||| ||||||||||||||||||||||| | |||||| |||||||  |||||||| |||| ||||||||||||||||||||||||||    
T  2007754 ccttcactcaacaaaaccgcattcattttctgctcagcaaatagaggccacgtgattaacggcacaccgtgcaccacactctcaagggttgaattccagc 2007853  T
Q  104 cacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaa 203  Q
    ||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2007854 cacaatgcgtcaagaacccaccaactgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaa 2007953  T
Q  204 gaacccagatggtaaaaactg 224  Q
    |||||||||||||||||||||    
T  2007954 gaacccagatggtaaaaactg 2007974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 2004374 - 2004594
Alignment:
Q  4 ccttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagc 103  Q
    |||||||||| |||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  2004374 ccttcactcaacaaaaccgcattcattttctgctcagcaaatagaggccatgttattagtggcacaccatgcaccacactctctagggttgaattccagc 2004473  T
Q  104 cacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaa 203  Q
    |||||||||||||||| || || | ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  2004474 cacaatgagtcaagaacccgccgactgagttgtgacttaggatttgaatctgcggcacccatgatgtaatgacaaaacctttctccttggttctctccaa 2004573  T
Q  204 gaacccagatggtaaaaactg 224  Q
    |||||| ||||| ||||||||    
T  2004574 gaacccggatggcaaaaactg 2004594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 1965314 - 1965108
Alignment:
Q  15 caaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtc 114  Q
    |||||| |||||||||  ||| |||||||||| ||||||||||||||||||||| ||||||| |||||| ||||||||||| ||||| ||||| ||| ||    
T  1965314 caaaactgcattcattccctgttcagcaaacataggccatgtgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactc 1965215  T
Q  115 aagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatg 214  Q
    ||||| || ||||||||  | ||||| |||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||    
T  1965214 aagaaccctccaattgaactatgactaaggatttgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatg 1965115  T
Q  215 gtaaaaa 221  Q
    |||||||    
T  1965114 gtaaaaa 1965108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 2014774 - 2014991
Alignment:
Q  4 ccttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagc 103  Q
    |||||||||| |||||| |||||| || ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  |||||||||| |    
T  2014774 ccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagcattgaattccaac 2014873  T
Q  104 cacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaa 203  Q
    |||| ||||||||||| ||||||| |||  ||||||  |||||||||||||| || |||||||||| |||||| |  ||||  ||||| |||||||||||    
T  2014874 cacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaa 2014973  T
Q  204 gaacccagatggtaaaaa 221  Q
    |||||| || ||||||||    
T  2014974 gaaccctgaaggtaaaaa 2014991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 2018157 - 2018374
Alignment:
Q  4 ccttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagc 103  Q
    |||||||||| |||||| |||||| || ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  2018157 ccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagcgttgaattccaac 2018256  T
Q  104 cacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaa 203  Q
    |||| ||||||||||| ||||||| |||  ||||||  |||||||||||||| || |||||||||| |||||| |  ||||  |||||  ||||||||||    
T  2018257 cacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtggtgcccatgatggaataaccatcccttgttccttttttctctccaa 2018356  T
Q  204 gaacccagatggtaaaaa 221  Q
    |||||| || ||||||||    
T  2018357 gaaccctgaaggtaaaaa 2018374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 1963658 - 1963435
Alignment:
Q  1 aggccttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattcc 100  Q
    ||||||||||  |||||||| |||||  || ||||||||||| ||| |||||| ||||||||||||||||||| || |||||||||||||||||||||||    
T  1963658 aggccttcacagagcaaaactgcatttgttctctgctcagcatacagaggccaagtgattagtggcacaccatacaccacactctcaagggttgaattcc 1963559  T
Q  101 agccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctc 200  Q
    | |||||||||| ||| || |||||||| ||  ||||||| |||||||||||||| || |||||||||| || ||| |  ||||  ||||||||||||||    
T  1963558 aaccacaatgagacaaaaacccaccaatggaactgtgactaaggatttgaatctgtggtgcccatgatggaacaaccatcccttgttccttggttctctc 1963459  T
Q  201 caagaacccagatggtaaaaactg 224  Q
    ||| ||||||||||||||||||||    
T  1963458 caaaaacccagatggtaaaaactg 1963435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 2437064 - 2436850
Alignment:
Q  7 tcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccac 106  Q
    ||||||| |||||| | |||| || ||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2437064 tcactcaacaaaaccgaattcgttctctgctcggcaaaaagaggccatgtgattagtggcacaccatgcaccacactctcaagggttgaattccagccac 2436965  T
Q  107 aatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaa 206  Q
    | ||| ||||||| ||||||| |||  ||||||| |||||||||| ||| || |||||||||| |||||| |  ||||  |||||||||||||| | |||    
T  2436964 agtgactcaagaaaccaccaactgatctgtgactaaggatttgaacctgtggtgcccatgatggaataaccatcccttgatccttggttctctctatgaa 2436865  T
Q  207 cccagatggtaaaaa 221  Q
    |||| ||||||||||    
T  2436864 cccacatggtaaaaa 2436850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2011366 - 2011586
Alignment:
Q  1 aggccttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattcc 100  Q
    ||||| ||| ||| |||||| |||||||||  ||| |||||||||| ||||||||||||||||||||| ||||| | |||||| ||||| |||||  |||    
T  2011366 aggccctcagtcaccaaaactgcattcattccctgttcagcaaacataggccatgtgattagtggcaccccatgaaccacactttcaagtgttgagctcc 2011465  T
Q  101 agccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctc 200  Q
    | ||||| ||| ||||||| || |||| |||  | ||||| |||||||||||||| || |||||||||||||| |||||||||| ||| |||||||||||    
T  2011466 aaccacagtgactcaagaacccgccaactgaactatgactaaggatttgaatctgaggtgcccatgatgtaatgacaaaaccttcctctttggttctctc 2011565  T
Q  201 caagaacccagatggtaaaaa 221  Q
    ||| |||||||||||||||||    
T  2011566 caaaaacccagatggtaaaaa 2011586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 3770193 - 3770260
Alignment:
Q  81 actctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggattt 148  Q
    ||||||||| ||||||||||| |||||||| || || ||||||||  |||| ||||||||||||||||    
T  3770193 actctcaagtgttgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgacttaggattt 3770260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 10201811 - 10201937
Alignment:
Q  6 ttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagcca 105  Q
    ||||||||  ||||| |||||||| || ||||||||| | |  |||||||  || |  |||||||||| || |||||||||||| ||||||||||| |||    
T  10201811 ttcactcaataaaacagcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaacca 10201910  T
Q  106 caatgagtcaagaatccaccaattgag 132  Q
    |||||| |||  || || |||||||||    
T  10201911 caatgactcacaaaccctccaattgag 10201937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 10208884 - 10209010
Alignment:
Q  6 ttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagcca 105  Q
    ||||||||  ||||| |||||||| || ||||||||| | |  |||||||  || |  |||||||||| || |||||||||||| ||||||||||| |||    
T  10208884 ttcactcaataaaacagcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaacca 10208983  T
Q  106 caatgagtcaagaatccaccaattgag 132  Q
    |||||| |||  || || |||||||||    
T  10208984 caatgactcacaaaccctccaattgag 10209010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 3708002 - 3707935
Alignment:
Q  81 actctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggattt 148  Q
    ||||||||| || |||||||| |||||||| || || ||||||||  |||| ||||||||||||||||    
T  3708002 actctcaagcgtcgaattccaaccacaatgtgttaaaaatccacctgttgaattgtgacttaggattt 3707935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 3777860 - 3778002
Alignment:
Q  81 actctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaa 180  Q
    |||||| || || |||||||| |||||||| || || ||||||||  ||||  |||| |||||||||||| ||||||| |||||  | | || ||| ||     
T  3777860 actctccagtgtcgaattccaaccacaatgtgttaaaaatccaccggttgaaatgtggcttaggatttgagtctgcggggcccaaaaaggaacaactaac 3777959  T
Q  181 cctttctccttggttctctccaagaacccagatggtaaaaact 223  Q
    ||||  || ||||||||||| ||||||||   |||||||||||    
T  3777960 ccttgttctttggttctctctaagaacccttgtggtaaaaact 3778002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 33005106 - 33005188
Alignment:
Q  82 ctctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgccca 164  Q
    ||||| || ||||||||||| |||||||| || || ||||||||| ||||  |||| |||||||||||| |||| || |||||    
T  33005106 ctctcgagtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggatttgagtctgtggtgccca 33005188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5902834 - 5902611
Alignment:
Q  1 aggccttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattcc 100  Q
    ||||| |||||||||| ||| ||||||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  5902834 aggccctcactcagcacaactgcattcattctttgctcaccaaacaaaggccatgtgattagtggcacaccatgcatcacactctcaaggattgaattcc 5902735  T
Q  101 agccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctc 200  Q
    ||||||| ||| ||||||||||||||| |||  ||||||| ||  ||| |||||| || |||||||||| |||||| |  |||| |||||||||||||||    
T  5902734 agccacagtgactcaagaatccaccaactgatctgtgactaagtgtttcaatctgaggtgcccatgatggaataaccatcccttgctccttggttctctc 5902635  T
Q  201 caagaacccagatggtaaaaactg 224  Q
    ||||||||||| ||||||||||||    
T  5902634 caagaacccaggtggtaaaaactg 5902611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 5906318 - 5906099
Alignment:
Q  1 aggccttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattcc 100  Q
    ||||| |||||||||| ||  ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | | ||||||||| ||||| |||    
T  5906318 aggccctcactcagcacaaatgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaactcc 5906219  T
Q  101 agccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctc 200  Q
    | ||||||||| ||||||||||||||| |||  ||||||| ||||||| |||||| || |||||||||| |||||| |  |||| |||||||||||||||    
T  5906218 aaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctc 5906119  T
Q  201 caagaacccagatggtaaaa 220  Q
    ||||||||||||||||||||    
T  5906118 caagaacccagatggtaaaa 5906099  T

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Target: scaffold0288 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 3557 - 3516
Alignment:
Q  90 ggttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  3557 ggttgaattccatccacaatgagtcaagaatccaccaattga 3516  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 4461417 - 4461458
Alignment:
Q  90 ggttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  4461417 ggttgaattccatccacaatgagtcaagaatccaccaattga 4461458  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 4622436 - 4622476
Alignment:
Q  90 ggttgaattccagccacaatgagtcaagaatccaccaattg 130  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  4622436 ggttgaattccatccacaatgagtcaagaatccaccaattg 4622476  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 4557419 - 4557460
Alignment:
Q  90 ggttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  4557419 ggttgagttccatccacaatgagtcaagaatccaccaattga 4557460  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 4592525 - 4592566
Alignment:
Q  90 ggttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  4592525 ggttgagttccatccacaatgagtcaagaatccaccaattga 4592566  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 4490191 - 4490152
Alignment:
Q  92 ttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  4490191 ttgagttccatccacaatgagtcaagaatccaccaattga 4490152  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 4267004 - 4266966
Alignment:
Q  90 ggttgaattccagccacaatgagtcaagaatccaccaat 128  Q
    |||||||||||| || |||||||||||||||||||||||    
T  4267004 ggttgaattccatccgcaatgagtcaagaatccaccaat 4266966  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 4299664 - 4299618
Alignment:
Q  85 tcaagggttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    |||| |||||| ||||| ||||| |||||||||||||||||||||||    
T  4299664 tcaatggttgagttccatccacagtgagtcaagaatccaccaattga 4299618  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 4626240 - 4626286
Alignment:
Q  85 tcaagggttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    |||| |||||| ||||| ||||||||||| |||||||||||||||||    
T  4626240 tcaatggttgagttccatccacaatgagttaagaatccaccaattga 4626286  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 4493250 - 4493287
Alignment:
Q  91 gttgaattccagccacaatgagtcaagaatccaccaat 128  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  4493250 gttgagttccatccacaatgagtcaagaatccaccaat 4493287  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 4506151 - 4506192
Alignment:
Q  90 ggttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    |||||| ||||| || ||||||||||||||||||||||||||    
T  4506151 ggttgagttccatccgcaatgagtcaagaatccaccaattga 4506192  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 4585930 - 4585971
Alignment:
Q  90 ggttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    |||||| ||||| ||||| |||||||||||||||||||||||    
T  4585930 ggttgagttccatccacagtgagtcaagaatccaccaattga 4585971  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 4613556 - 4613515
Alignment:
Q  90 ggttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    |||||| ||||| |||||||||||||||||||| ||||||||    
T  4613556 ggttgagttccatccacaatgagtcaagaatccgccaattga 4613515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 845007 - 845059
Alignment:
Q  79 acactctcaagggttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    ||||| ||||| ||||||||||| ||||||||||| || || |||||||||||    
T  845007 acactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattga 845059  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 870291 - 870343
Alignment:
Q  79 acactctcaagggttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    ||||| ||||| ||||||||||| ||||||||||| || || |||||||||||    
T  870291 acactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattga 870343  T

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Target: scaffold0184 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 11571 - 11687
Alignment:
Q  15 caaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtc 114  Q
    |||||| ||||| ||||| |||||||||||||||||||| |  || |  ||||||||   ||  |||||||||||   ||||||||| ||||||||||||    
T  11571 caaaacagcattaattttttgctcagcaaacaaaggccaagcaatcataggcacacccaacactacactctcaagaactgaattccaaccacaatgagtc 11670  T
Q  115 aagaatccaccaattga 131  Q
    || ||| ||||||||||    
T  11671 aaaaatgcaccaattga 11687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 41511490 - 41511444
Alignment:
Q  85 tcaagggttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  41511490 tcaagtgttgaattccaaccacaatgagtcaaaaatccaccaattga 41511444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 3086715 - 3086755
Alignment:
Q  91 gttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  3086715 gttgagttccatccacaatgagtcaagaatccaccaattga 3086755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 4529 - 4483
Alignment:
Q  85 tcaagggttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    |||| |||||| ||||| || ||||||||||||||||||||||||||    
T  4529 tcaatggttgagttccatccgcaatgagtcaagaatccaccaattga 4483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 20155290 - 20155250
Alignment:
Q  91 gttgaattccagccacaatgagtcaagaatccaccaattga 131  Q
    ||||||||||| |||||||| ||||||||||| ||||||||    
T  20155290 gttgaattccatccacaatgtgtcaagaatcctccaattga 20155250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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