View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_high_8 (Length: 403)
Name: NF5166_high_8
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_high_8 |
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| [»] scaffold0449 (3 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 6295 - 6210
Alignment:
| Q |
300 |
aacactcgtttgtaacaaagttcaaataaattccttaggaaagttttcaaaacatgcagtcatttacaaactgaggagggagaaag |
385 |
Q |
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| T |
6295 |
aacactcgtttgtaacaaagttcaaataaattacttaggaaagttttcaaaacacgcagtcatttacaaagtgaggagggagaaag |
6210 |
T |
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Target: scaffold0449; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 6396 - 6338
Alignment:
| Q |
156 |
tattcacttattttacatagttttcaaaaacactcgtttatttcattactttagtgttt |
214 |
Q |
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| T |
6396 |
tattcacttattttacatagttttcaaaaacactcttttatttcattactttaatgttt |
6338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0449; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 6514 - 6467
Alignment:
| Q |
26 |
cacaattttttagttgagttattaattaatttcattacttaattactc |
73 |
Q |
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| T |
6514 |
cacaattttttagttgagtcattaattaatttcattacttaactactc |
6467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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