View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_low_10 (Length: 393)
Name: NF5166_low_10
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 32912424 - 32912044
Alignment:
| Q |
1 |
cataaaaatatactgaaatttgaaactttggaatcattgatcatgtaagnnnnnnnnncttcaatcaaattattatctgaaattatcatatagacgaaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
32912424 |
cataaaaatatactgaaatttgaaactttgaaatcattgatcatgtaagtttttttt--ttcaatcaaattattatctgaaattatcata--gacgaaat |
32912329 |
T |
|
| Q |
101 |
agtgtgatcgaagattttttcagttttaacaaataactaacaatttgaaacttcaataacttgtgaaacaaaattgtgtttaccatcaaatccagctaaa |
200 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32912328 |
agtgtgatcgaagattttttcagctttaacaaataactaacaatttgaaacttcaataacttgtgaaacaaacttgtgtttaccatcaaatccagctaaa |
32912229 |
T |
|
| Q |
201 |
atgcaagtgttaggagaactacgagtgaccttcataatctcagctcgagatgcttctctaccaaagtgtaagtaactgaaagaaacaatatattattagc |
300 |
Q |
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| T |
32912228 |
aggcaagggttaggagaactacgagtgaccttcataatctcagctcgagatgcttctctaccaaagtgtaagtaactgaaagaaacaatatattattagc |
32912129 |
T |
|
| Q |
301 |
catgatatatatgcaactaaaattttatctgtattgacgtgtttgtgtcagtgtcgtgtctgatgttcgtgtccatgtctgtgct |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32912128 |
catgatatatatgcaactaaaattttatctgtattgacgtgtttgtgtcagtgtcgtgtctgatgttcgtgtccatgtatgtgct |
32912044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 139 - 278
Target Start/End: Complemental strand, 32924252 - 32924113
Alignment:
| Q |
139 |
aacaatttgaaacttcaataacttgtgaaacaaaattgtgtttaccatcaaatccagctaaaatgcaagtgttaggagaactacgagtgaccttcataat |
238 |
Q |
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|
||||| || ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||| |||||| || | |||||||||| ||| |
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| T |
32924252 |
aacaacttaaaacttcaataacttgtgaaaataacttgtgtttaccatcaaatccagctaaaatgcaagggttgggagaattatgtgtgaccttcaaaat |
32924153 |
T |
|
| Q |
239 |
ctcagctcgagatgcttctctaccaaagtgtaagtaactg |
278 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||| |
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| T |
32924152 |
ctctgctcgagatgcttctctaccaaagtgtaagtaactg |
32924113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 32942873 - 32942763
Alignment:
| Q |
175 |
tgtgtttaccatcaaatccagctaaaatgcaagtgttaggagaactacgagtgaccttcataatctcagctcgagatgcttctctaccaaagtgtaagta |
274 |
Q |
| |
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|||||||||||| | | |||||||||||||||| |||||||||| | |||||| |||| ||| ||||| |||||||||||| | ||||| | || || |
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| T |
32942873 |
tgtgtttaccatgatagccagctaaaatgcaaggattaggagaaccattagtgactttcaaaatttcagcacgagatgcttctttgccaaaccgcaaata |
32942774 |
T |
|
| Q |
275 |
actgaaagaaa |
285 |
Q |
| |
|
||||||||||| |
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|
| T |
32942773 |
actgaaagaaa |
32942763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 32950054 - 32949944
Alignment:
| Q |
175 |
tgtgtttaccatcaaatccagctaaaatgcaagtgttaggagaactacgagtgaccttcataatctcagctcgagatgcttctctaccaaagtgtaagta |
274 |
Q |
| |
|
|||||||||||| | | |||||||||||||||| |||||||||| | |||||| |||| ||| ||||| |||||||||||| | ||||| | || || |
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| T |
32950054 |
tgtgtttaccatgatagccagctaaaatgcaaggattaggagaaccattagtgactttcaaaatttcagcacgagatgcttctttgccaaaccgcaaata |
32949955 |
T |
|
| Q |
275 |
actgaaagaaa |
285 |
Q |
| |
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||||||||||| |
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|
| T |
32949954 |
actgaaagaaa |
32949944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 174 - 285
Target Start/End: Complemental strand, 11824688 - 11824577
Alignment:
| Q |
174 |
ttgtgtttaccatcaaatccagctaaaatgcaagtgttaggagaactacgagtgaccttcataatctcagctcgagatgcttctctaccaaagtgtaagt |
273 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||| || |||||||||||| ||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
11824688 |
ttgtatttaccatcaaatccagctaaaatgcaagggttaggagaattatgagtgaccttcaaaatctcagcccgagatgcttctgtaccaaagtgtaagt |
11824589 |
T |
|
| Q |
274 |
aactgaaagaaa |
285 |
Q |
| |
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||||| |||||| |
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|
| T |
11824588 |
aactggaagaaa |
11824577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 32740757 - 32740717
Alignment:
| Q |
345 |
gtgtcagtgtcgtgtctgatgttcgtgtccatgtctgtgct |
385 |
Q |
| |
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|||||||||||||||| |||||||||||| | ||||||||| |
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| T |
32740757 |
gtgtcagtgtcgtgtcagatgttcgtgtcgaagtctgtgct |
32740717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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