View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_low_17 (Length: 324)
Name: NF5166_low_17
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 43692018 - 43691725
Alignment:
| Q |
11 |
aacctgtgatgtcgttttgagcagctttgatgcaataaaaaacaaggaatctgcatggaatttttgtaaaaatgtggcttaattaaatttgaaacaatac |
110 |
Q |
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| T |
43692018 |
aacctgtgatgtcgttttgagcagctttgatgcaataaaaaacaaggaatctgcatggaatttttgtaaaaatgtggcttaattaaatttgaaacaaaac |
43691919 |
T |
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| Q |
111 |
gaaattatttaatgcaagacgaatttaatttttactaacccgttattaagcccttatgtgctctaataattcctgtcttcacaatgcctggatgcactgc |
210 |
Q |
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| T |
43691918 |
gaaattatttaatgcaagacgaattt-----ttactaacccgttattaagcccttatgtgctctaataattcctgtcttcacaatgcctggatgcactgc |
43691824 |
T |
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| Q |
211 |
attgatagttactcttgcattccttgcctataattattttccaatattnnnnnnnntattagtacaaagttttattttagtggcatgattatcatttat |
309 |
Q |
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| T |
43691823 |
attgatagttactcttgcattccttgcctataattattttccaatattaaaaaaaatattagtacaaagttttattttagtggcatgattatcatttat |
43691725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 43693971 - 43693904
Alignment:
| Q |
174 |
taataattcctgtcttcacaatgcctggatgcactgcattgatagttactcttgcattccttgcctat |
241 |
Q |
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| T |
43693971 |
taataatttttgtcctcacaatgtccggatgcactgcattgttagttactcttgcattccttgcctat |
43693904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 43694365 - 43694305
Alignment:
| Q |
26 |
tttgagcagctttgatgcaataaaaaacaaggaatctgcatggaatttttgtaaaaatgtg |
86 |
Q |
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| T |
43694365 |
tttgagcaactttgatgcaatgaaaaagaagtaatctgcatggaatttttgcaaatatgtg |
43694305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 152 - 247
Target Start/End: Complemental strand, 34748964 - 34748869
Alignment:
| Q |
152 |
gttattaagcccttatgtgctctaataattcctgtcttcacaatgcctggatgcactgcattgatagttactcttgcattccttgcctataattat |
247 |
Q |
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| T |
34748964 |
gttattaaccccttgtgagatttaataattcctgtctttacaatacctggatgaactgcattcatagttactcttgctttccttgcctataattat |
34748869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 34749115 - 34749052
Alignment:
| Q |
11 |
aacctgtgatgtcgttttgagcagctttgatgcaataaaaaacaaggaatctgcatggaatttt |
74 |
Q |
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|||||||||||||| ||| || | ||||||||| || ||||| ||||||||||||||||||||| |
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| T |
34749115 |
aacctgtgatgtcgatttcagtaactttgatgctatgaaaaataaggaatctgcatggaatttt |
34749052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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