View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5166_low_18 (Length: 322)
Name: NF5166_low_18
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 3110105 - 3110415
Alignment:
| Q |
10 |
acatcatcagctctatctaatttcatttcattacaaaaaccacgaatagccgcagcataggcataatcctctataggtgcattactcgctttacatcgtt |
109 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
3110105 |
acatcctcagctttatctaatttcatttcattacaaaacccacgaatagccgcagcataggcataaacctctataggtgcattactcgctctacatcgtt |
3110204 |
T |
|
| Q |
110 |
cgagcagcttatatcccacatcagacatgttatttttacacaacccctcaatataagcagcgtaacaatacgaattcagagtcacaccagcttcctccat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3110205 |
cgagcagcttatatcccacatcagacatgttatttttacacaacccctcaatataagcagcgtaacaatacgaattcggagtcacaccagcttcctccat |
3110304 |
T |
|
| Q |
210 |
ttcatcaaatacatattccacatgtttcaaatcatcactattcttacacaag-ccttgataacaatagcataagtgtgatgattaggagacaaaccaacc |
308 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3110305 |
ttcatcaaatacatattccacgtgtttcaaatcatcactattcttacacaagcccttgataacaatagcataagtgtgatgattaggacacaaaccaacc |
3110404 |
T |
|
| Q |
309 |
ctcttgatttc |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
3110405 |
ctcttgatttc |
3110415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 41626745 - 41626550
Alignment:
| Q |
23 |
tatctaatttcatttcattacaaaaaccacgaatagccgcagcataggcataatcctctataggtgcattactcgctttacatcgttcg-agcagcttat |
121 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| | |||| ||||||||| | || ||||| |||||| || | || | | ||| |||| | || |
|
|
| T |
41626745 |
tatctaatttcatttcattacaaaacccgcgaataactgcagtgtaggcataaacatcaataggagcattattctcccta-agagctcggagcaaatcat |
41626647 |
T |
|
| Q |
122 |
atcccacatcagacatgttatttttacacaacccctcaatataagcagcgtaacaatacgaattcagagtcacaccagcttcctccatttcatcaaa |
218 |
Q |
| |
|
|||||| ||||||| | ||| ||||||||||||||||||||||| || || |||||||||||| ||||||| |||||||| | |||||||||||| |
|
|
| T |
41626646 |
atcccaaatcagactgatgattattacacaacccctcaatataagctgcatagcaatacgaattcggagtcaccccagcttctttcatttcatcaaa |
41626550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University