View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_low_19 (Length: 317)
Name: NF5166_low_19
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_19 |
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| [»] scaffold0290 (1 HSPs) |
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Alignment Details
Target: scaffold0290 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 317
Target Start/End: Complemental strand, 7058 - 6745
Alignment:
| Q |
6 |
attctataagagcacaatcaccagaagaggggagacattttttacacgaacaacaacataaaaacacctgcaatacattctcaaaccccaacgaatatca |
105 |
Q |
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| T |
7058 |
attctataagaacacaatcaccagaagaggggaggcattttttacacgaacaacaacataaaaaaacctgcaatacattctcaaaccccgacgaa-atca |
6960 |
T |
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| Q |
106 |
aacaccagaagagggaacattttttatacttttcaagatttgactaccctacttctaaggaattattta----tttggtaagctcaatcgcgaatggtta |
201 |
Q |
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| T |
6959 |
aacaccagaagagggaacattttttatacttttcaagatttgactaccctacttctaaggaattatttatggttttggtaagctcaatcgcgaatggtta |
6860 |
T |
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| Q |
202 |
atgttttgagagaaattaagatgattatcgtaactttaattttatgcnnnnnnnntgtaatataatttcaaaattttaaggatgtacttatggttatcga |
301 |
Q |
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| T |
6859 |
atgttttgagagaaattaaaatgattatcgtaactttaattttatgc-aaaaaaatgtaatataatttcaaaatttgaagaatgtacatatggttatcga |
6761 |
T |
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| Q |
302 |
ttgaatatctgtctac |
317 |
Q |
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| T |
6760 |
tggaatctctgtctac |
6745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 18980955 - 18980788
Alignment:
| Q |
6 |
attctataagagcacaatcaccagaagaggggagacattttttacacgaacaacaacataaaaacacctgcaatacattctcaaaccccaacgaatatca |
105 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||| |||||||||| |
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| T |
18980955 |
attctataagaacacaatcaccagaagaggggaggcattttttacacgaacaacaacataaaaaaacttgtaatacattctcaaaccccgacgaatatca |
18980856 |
T |
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| Q |
106 |
aacaccagaagagggaacattttttatacttttcaagatttgactaccctacttctaaggaattattt |
173 |
Q |
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| T |
18980855 |
aacaccagaagagggaacattttttatacttttcaagatttgactaccctacttctaaggaattattt |
18980788 |
T |
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