View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_low_2 (Length: 510)
Name: NF5166_low_2
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 14 - 491
Target Start/End: Original strand, 54166050 - 54166527
Alignment:
| Q |
14 |
agaacacaatccatataagttttctttccacaacttctctcttccatctccaatgagatgagacaaaaacagtatcccagattcttatgtttttcccgga |
113 |
Q |
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| T |
54166050 |
agaacacaatccatataagttttctttccacaacttctctcttccatctccaatgagatgagacaaaaacactatcccagattcttatgtttttcccgga |
54166149 |
T |
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| Q |
114 |
taaattacggttgaagaagcaaatgccattatattgtttccaaacattgacagagcggccgtgttctaacacccacttaaaaataatagggatctaacaa |
213 |
Q |
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| T |
54166150 |
taaattacggttgaagaagcaaatgccattatattgtttccaaacattgacagagcggccgtgttctaacacccacttaaaaataatagggatctaacaa |
54166249 |
T |
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| Q |
214 |
acaaccaataaaatctgaaggcaactgaaacttgctaaaattaatgaaaagaatcatggaatcataatgcaaggtcattacctcccaaatacaagtgcag |
313 |
Q |
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| T |
54166250 |
acaaccaataaaatctgaaggcaactgaaacttgctaaaattaatgaaaagaatcatggaatcataatgcaaggtcattacctcccaaatacaagtgcag |
54166349 |
T |
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| Q |
314 |
ttaaagcggtggtgccagaggagatatcaagcgagctggaatctgcaaaagcataatcagctttcataaacgcacttgtaattgccttccccacgcaagt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54166350 |
ttaaagcggtggtgccagaggagatatcaagcgagctggaatctgcaaaagcataatcagctttcataaacgcacttgtaattgccttccccacgcaagt |
54166449 |
T |
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| Q |
414 |
tggaaattgagagtcctcaacaatgagtctaaggatgttatttcttacaaacaaagcagcatcggttcctccatgacc |
491 |
Q |
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| T |
54166450 |
tggaaattgagagtcctcaacaatgagtctaaggatgttatttcttacaaacaaagcagcatcggttcctccatgacc |
54166527 |
T |
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