View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_low_24 (Length: 274)
Name: NF5166_low_24
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 2557107 - 2557367
Alignment:
| Q |
9 |
gacatcatcaacaaaaacgtttagaatatatacttggcctacacaggttaaatttaagatgtaaacttcaagagttttgaactgtagtaattcaactaca |
108 |
Q |
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| T |
2557107 |
gacaacataaacaaaaacgtttagaatatatacttggcctacacaggttaaatttaagatgtaaacttcaagagttttgaactgtagtaattcaactaca |
2557206 |
T |
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| Q |
109 |
aaaatttatatgtttagttcttttttcttattattccat-aaaagttgtccaagttcttcgccgcaatcttcctgtgcatgatgtccagtctataaagag |
207 |
Q |
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| T |
2557207 |
aaaatttatatgtttagttcttttttcttatttttccataaaaagttgtccaagttcttcgccgcaatcttcctgtgcatgatgtccagcctataaagag |
2557306 |
T |
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| Q |
208 |
caagaagtttattgtaacattcccttatgagaacagaaagatgtatggagagtataatcta |
268 |
Q |
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| T |
2557307 |
caagaagtttattgtaacattcccttatgagaacagaaagatgtatggagagtataatcta |
2557367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 32 - 268
Target Start/End: Original strand, 2566990 - 2567228
Alignment:
| Q |
32 |
gaatatatacttggcctacacaggttaaatttaagatgtaaacttcaagagttttgaactgtagtaattcaactacaaaaatttatatgtttagttcttt |
131 |
Q |
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| T |
2566990 |
gaatatatacttggcctacacaggttaaatttcagatgtaaacttcaaaagttttaaattgtagtaatttaactacaaaaatttatattttcagttcttt |
2567089 |
T |
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| Q |
132 |
tttcttattattccataa--aagttgtccaagttcttcgccgcaatcttcctgtgcatgatgtccagtctataaagagcaagaagtttattgtaacattc |
229 |
Q |
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| T |
2567090 |
tttcttattattccataaataagttgtccaagttcttcgccgcaatcttcctgtgcatgatgtccagcctacaaagtgcaagaagtttattgtatcattc |
2567189 |
T |
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| Q |
230 |
ccttatgagaacagaaagatgtatggagagtataatcta |
268 |
Q |
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| T |
2567190 |
ccttatgagaatagaaagatgtatgaaaagtataatcta |
2567228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 254
Target Start/End: Original strand, 3276668 - 3276807
Alignment:
| Q |
118 |
atgtttagttctttttt-cttattattccataaa--agttgtccaagttcttcgccgcaatcttcctgtgcatgatgtccagtctataaagagcaagaag |
214 |
Q |
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||||||||||||||||| | || ||| ||||||| || |||||| | ||||||| |||||||||||| ||||||||||||| ||||||||| ||||||| |
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| T |
3276668 |
atgtttagttcttttttgcatactatcccataaataaggtgtccacgctcttcgctgcaatcttcctgcgcatgatgtccagcctataaagaacaagaag |
3276767 |
T |
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| Q |
215 |
tttattgtaacattcccttatgagaacagaaagatgtatg |
254 |
Q |
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| T |
3276768 |
ttgatagtatcattcccttgtaagaataggaagatttatg |
3276807 |
T |
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