View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_low_26 (Length: 260)
Name: NF5166_low_26
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 28789602 - 28789356
Alignment:
| Q |
11 |
cagaacctgtgaagactcacctccgtaacatgatcattgtgcctgagatgattggtagcattattggtgtctacaatggaaagaccttcaatcaagttga |
110 |
Q |
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| T |
28789602 |
cagaaccagtgaggaatcacctccgtaacatgatcattgtgcctgagatgattggtagcattattggtgtctacaatggaaagaccttcaatcaagttga |
28789503 |
T |
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| Q |
111 |
aattaaacctgaaatgattggccactatcttgctgaattctcgatctcttacaagcctgttaagcacggtaggcctggtatcggtgctactaactcctcc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28789502 |
aattaaacctgaaatgattggccactatcttgctgaattctcgatctcttacaagccggttaagcacggtaggcctggtatcggtgctactaactcctcc |
28789403 |
T |
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| Q |
211 |
aggtttattcctctcaagtgaagactctcatcaatgccctccttcta |
257 |
Q |
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| T |
28789402 |
aggtttattcctctcaagtgaagactctcatcaatgccctccttcta |
28789356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 31247811 - 31248034
Alignment:
| Q |
11 |
cagaacctgtgaagactcacctccgtaacatgatcattgtgcctgagatgattggtagcattattggtgtctacaatggaaagaccttcaatcaagttga |
110 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
31247811 |
cagaacctgtgaggactcacctccgtaacatgatcattgtacctgagatgatcggtagcatcattggtgtctacaatggaaagaccttcaaccaagttga |
31247910 |
T |
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| Q |
111 |
aattaaacctgaaatgattggccactatcttgctgaattctcgatctcttacaagcctgttaagcacggtaggcctggtatcggtgctactaactcctcc |
210 |
Q |
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| T |
31247911 |
aattaagcctgaaatgattggtcactatttggctgaattctcaatctcttacaagcctgttaagcatggtaggcctggtattggtgccactcactcctcc |
31248010 |
T |
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| Q |
211 |
aggtttattcctctcaagtgaaga |
234 |
Q |
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|||||||||||||||||||||||| |
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| T |
31248011 |
aggtttattcctctcaagtgaaga |
31248034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 44326023 - 44325802
Alignment:
| Q |
11 |
cagaacctgtgaagactcacctccgtaacatgatcattgtgcctgagatgattggtagcattattggtgtctacaatggaaagaccttcaatcaagttga |
110 |
Q |
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|||||||||| | ||| || || ||||||||||||||||| |||||||||||||| ||||||||||| || |||||||| |||||||| || || ||||| |
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| T |
44326023 |
cagaacctgttaggacccatcttcgtaacatgatcattgtacctgagatgattgggagcattattggagtgtacaatgggaagacctttaaccaggttga |
44325924 |
T |
|
| Q |
111 |
aattaaacctgaaatgattggccactatcttgctgaattctcgatctcttacaagcctgttaagcacggtaggcctggtatcggtgctactaactcctcc |
210 |
Q |
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||| |||||||| ||||| || || || |||||||||||||| || || ||||||||||||||||||||||| |||||||| ||||||||| |||||||| |
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| T |
44325923 |
aatcaaacctgagatgatcggtcattaccttgctgaattctcaatttcatacaagcctgttaagcacggtagacctggtattggtgctactcactcctcc |
44325824 |
T |
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| Q |
211 |
aggtttattcctctcaagtgaa |
232 |
Q |
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||||| |||||||||||||||| |
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| T |
44325823 |
aggttcattcctctcaagtgaa |
44325802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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