View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5166_low_3 (Length: 478)
Name: NF5166_low_3
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 9 - 462
Target Start/End: Original strand, 27878178 - 27878631
Alignment:
| Q |
9 |
acatcatcaaaattgcataaaacacgaaacaaaacattcagcgatagaaatttttcaaatttcttaccttttcatactattcagggcaagtggactaatc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878178 |
acatcatcaaaattgcataaaacacgaaacaaaacattcagtgatagatttttttcaaatttcttaccttttcatactattcagggcaagtggactaatc |
27878277 |
T |
|
| Q |
109 |
tgtgattgagaagaaccaggttgcaacctcttcttcatgaaatcatcaccccatttcaatctatcaacagtaacatcaccacaccacaaaattcctctga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27878278 |
tgtgattgagaagaaccaggttgcaacctcttcttcatgaaatcatcaccccatttcaatctatcaacagtaacatcaccgcaccacaaaattcctctga |
27878377 |
T |
|
| Q |
209 |
tcatttgtcctgaacctgcagcaatccatctaccaaatcttccactataatcctccacgtttggtgccaacgttgtccaataagcagcagcagaattttc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878378 |
tcatttgtcctgaacctgcagcaatccatctaccaaatcttccactataatcctccacgtttggtgccaacgttgtccaataagcagcagcagaattttc |
27878477 |
T |
|
| Q |
309 |
ctctacatcttcctttttctccaaaacctcccaccctttaacacccttcaccttctcaacagaaagaagactatacttttcaagaacctcatcaagtttc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27878478 |
ctctacatcttcctttttctccaaaacctcccaccctttaacacccttcaccttctcaacagaaagaagactgtacttttcaagaacctcatcaagtttc |
27878577 |
T |
|
| Q |
409 |
ttcaaaactttctttgacccttttgccgccactgtcaatccatagttcaaaact |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878578 |
ttcaaaactttctttgacccttttgccgccactgtcaatccatagttcaaaact |
27878631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 31870186 - 31870249
Alignment:
| Q |
137 |
tcttcttcatgaaatcatcaccccatttcaatctatcaacagtaacatcaccacaccacaaaat |
200 |
Q |
| |
|
|||||||||| | |||| |||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
31870186 |
tcttcttcataatctcattaccccatttcaacctatcaacagtaacatccccacaccacaaaat |
31870249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University