View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5166_low_30 (Length: 251)
Name: NF5166_low_30
Description: NF5166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5166_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 28789375 - 28789165
Alignment:
| Q |
17 |
tcatcaatgccctccttctatatttcaatgcaaatttttgcttgttttacttgaactatttaattaattcatttctatttgttaccgttatcaaatttag |
116 |
Q |
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| T |
28789375 |
tcatcaatgccctccttctacatttcaatgcaaatttttgcttgttttacttgaactatttaattaattcatttctatttgttactgttatcaaatttag |
28789276 |
T |
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| Q |
117 |
ggatatcagtgaactaaaactttgggtttaaattgtctattgatggtttttggagtttttgtttgattaaatttatatgcttgtccgtcctcaaattttg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28789275 |
ggatatcagtgaactaaaactttgggtttaaattgtctattgatgctttttggagtttttgtttgattaaatttatatgcttctccgtcctcaaattttg |
28789176 |
T |
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| Q |
217 |
accaatcaatc |
227 |
Q |
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||||||||||| |
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| T |
28789175 |
accaatcaatc |
28789165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 180
Target Start/End: Original strand, 31248051 - 31248198
Alignment:
| Q |
33 |
tctatatttcaatgcaaatttttgcttgttttacttgaactatttaattaattcatttctatttgttaccgttatcaaatttagggatatcagtgaacta |
132 |
Q |
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||||| ||| |||||||| |||||||||||||||| ||||||||||| | | |||||||||||| || ||||| | | | |||||||||||||||| |
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| T |
31248051 |
tctatcttttaatgcaaacttttgcttgttttactggaactatttaaatgctccatttctatttgatattgttatgacaata--ggatatcagtgaacta |
31248148 |
T |
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| Q |
133 |
aaactttgggtttaaattgtctattgat--ggtttttggagtttttgttt |
180 |
Q |
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|| ||||||||||||||||||||| || | |||||||||||||||||| |
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| T |
31248149 |
aagttttgggtttaaattgtctatttatgagctttttggagtttttgttt |
31248198 |
T |
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